MIxS: Minimum Information about any (X) Sequence

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The GSC is preparing for the MIxS 6.2.0 release. Thanks to everyone who has contributed in any way!

The new release primarily consists of converting a spreadsheet expressing MIxS 6.1 into a LinkML artifact, which now serves as the source of truth. We have also started to follow the LinkML cookiecutter layout. MIxS users should see very few changes in the content, although legacy term attributes like "Definition", "Expected value", "Value syntax" and "Section" have been broken down into their LinkML equivalents, like description, range, pattern and in_subset.

We have some known issues, and you may find others. Please report them including text snippets and or screen shots!

Until this message is removed:

• You can continue to use any MIxS 6.0 to 6.1.1 artifacts you have previously downloaded.
• Or start some new downloads by browsing https://github.com/GenomicsStandardsConsortium/mixs/tree/mixs6.1.1/mixs.

If you have questions or concerns in the interim, please contact gensc-twg@groups.google.com

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Documentation Website

https://w3id.org/mixs

Repository Structure

• examples/ - example data
• project/ - project files (do not edit these)
• src/ - source files (edit these)
  • mixs
    • schema -- LinkML schema (edit this)
    • datamodel -- generated Python datamodel
• tests/ - Python tests

Developer Documentation

Use the `make` command to generate project artefacts:

• make all: make everything
• make deploy: deploys site

Credits

This project was made with linkml-project-cookiecutter.