Pinned

1. equifold equifold Public

   Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

   Python 116 15

2. scimilarity scimilarity Public

   A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

   Python 69 1

3. polygraph polygraph Public

   Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.

   Jupyter Notebook 24

4. epiregulon epiregulon Public

   Construct gene regulatory networks and infer transcription factor (TF) activity in single cells by integration of scATAC-seq and scRNA-seq data and incorporation of public bulk TF ChIP-seq data.

   R 1