deMULTIplex2-benchmark

This repository maintains code for benchmarking the performance of deMULTIplex2 and reproducing figures in the deMULTIplex2 manuscript.

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
benchmark_res		benchmark_res
McGinnis_8donor_benchmarking_MULTI.R		McGinnis_8donor_benchmarking_MULTI.R
McGinnis_8donor_benchmarking_SCMK.R		McGinnis_8donor_benchmarking_SCMK.R
McGinnis_seq_error_test.R		McGinnis_seq_error_test.R
README.md		README.md
Stoeckius_4celline_benchmarking.R		Stoeckius_4celline_benchmarking.R
Stoeckius_8donor_benchmarking.R		Stoeckius_8donor_benchmarking.R
Winkler_PDX_benchmarking.R		Winkler_PDX_benchmarking.R
benchmarking_summary.R		benchmarking_summary.R
benchmarking_summary_alldata.R		benchmarking_summary_alldata.R
cell_downsample_simulation.R		cell_downsample_simulation.R
demultiplex2_benchmark.Rproj		demultiplex2_benchmark.Rproj
downsample_McGinnis_8donor_MULTI.R		downsample_McGinnis_8donor_MULTI.R
downsample_McGinnis_8donor_SCMK.R		downsample_McGinnis_8donor_SCMK.R
gaublomme_benchmarking.R		gaublomme_benchmarking.R
gaublomme_preprocess.R		gaublomme_preprocess.R
read_downsample_simulation.R		read_downsample_simulation.R
robustness_analysis.R		robustness_analysis.R
simulate_model_update.R		simulate_model_update.R
simulation_Figure_demo.R		simulation_Figure_demo.R

Gartner-Lab/deMULTIplex2-benchmark