v1.0.1

What's Changed

• Fix potential difference calculations in molar variables by @francoishamon in #1228
• Unit testing on Lassen - Laplace2D with serial direct solver by @castelletto1 in #1239
• Compile mathpresso targets iff mathpresso option is requested. by @TotoGaz in #1246
• Improving lagrangian contact mechanics solver + LAI capabilities by @andrea-franceschini in #986
• change workflow documentation by @rrsettgast in #1244
• Provide docker solution to docker restriction by @TotoGaz in #1247
• Adding an mesh tools python package for GEOSX by @cssherman in #1224
• Improvements to EFEM solver. by @CusiniM in #1147
• LC Spack Support by @corbett5 in #1204
• Fixed bug in averageOverSecondDim with 1D arrays. by @corbett5 in #1250
• Implemented dispatch for mimetic inner product selection by @francoishamon in #1190
• WIP - Add Debug CUDA build to Travis CI by @bmhan12 in #1252
• Updates to Phase-Field Fracture - Stress Decomposition and Nonlinear Degradation Functions by @andrembcosta in #1144
• config-build works with Python3 by @corbett5 in #1251
• Fixed bug related to matching perforations to reservoir elements by @francoishamon in #1206
• Fixed bug linking to system tpls. by @corbett5 in #1265
• Fix missing blob on GCP by @TotoGaz in #1276
• Virtual Element Method by @andrea-borio in #1220
• Travis Cuda Clang Debug Build by @bmhan12 in #1270
• Fixing wrong buffer in test. by @TotoGaz in #1281
• Re-enable pinned memory. by @corbett5 in #1283
• Update Hypre and CHAI TPLs by @rrsettgast in #1282
• Fix to default destructor missing by @herve-gross in #1268
• Correct a typo: sparisty by @sytuannguyen in #1271
• Using clang-tidy to correct legacy namings by @TotoGaz in #1286
• Removed Doxygen warnings on Quartz by @francoishamon in #1293
• Minor cameBack correction by @TotoGaz in #1294
• fix incorrectly reverted LvArray submodule by @rrsettgast in #1295
• Bugfix/sytuan/pangea build by @sytuannguyen in #1253
• Remove redundant member variables in LaplaceFEM solver by @sytuannguyen in #1298
• Apply renaming to function calls from Petsc LAI by @klevzoff in #1300
• Fix to boundedPlane to avoid missing some embedded elements. by @CusiniM in #1304
• Replace std::string with string by @rrsettgast in #1301
• Updating publications.rst by @joshua-white in #1287
• Fixed crash in SinglePhaseFVM with wells and fractures by @francoishamon in #1306
• Apply renaming to update functions in CompositionalMultiphaseFlowKernels by @francoishamon in #1310
• Modified well controls to match Intersect results by @francoishamon in #1202
• Update TPL by @TotoGaz in #1314
• Update TPL by @TotoGaz in #1315
• Update submodule BLT to v0.3.6 by @TotoGaz in #1316
• Improve logs when product is not found in catalog. by @TotoGaz in #1305
• Python interface by @corbett5 in #1068
• Poroelasticity with embedded fractures by @CusiniM in #1229
• Adding Drucker-Prager plasticity model by @joshua-white in #974
• Implement relative permeabilities with tables on device by @francoishamon in #1277
• Corbett/references and exceptions by @corbett5 in #1318
• Add hybrid FVM compositional multiphase solver by @francoishamon in #901
• Updated Build Guide by @klevzoff in #1332
• Fix Debug-build compile fail on Lassen by @wrtobin in #1337
• Update CO2-brine model documentation by @francoishamon in #1330
• Enable uncrustify for Pangea by @sytuannguyen in #1339
• Fixed bug in the computation of the Peaceman index by @francoishamon in #1341
• Re-enable Doxygen on Travis and fix existing warnings by @klevzoff in #1345
• Update Caliper.rst by @corbett5 in #1346
• Process external components after core components. by @corbett5 in #1347
• Fix VTK output to put plot files under output path by @klevzoff in #1343
• boomerAMG on GPU for SolidMechanicsLagrangianSSLE by @castelletto1 in #1054
• Implemented Dead-Oil model working on device by @francoishamon in #1313
• Adding asyncronous kernel launching and restructuring the CommunicationTools routines to expose more async to allow for latency hiding by @wrtobin in #1319
• update TPLs for Pangea build by @sytuannguyen in #1358
• Kernels for poroelastic solvers by @castelletto1 in #1353
• Implement CO2Brine model on GPU by @francoishamon in #1325
• Small fixes to tutorials. by @CusiniM in #1365
• Changes for Summit. by @corbett5 in #1367
• Fixed debug compilation on Lassen by @francoishamon in #1368
• Removing dead code + tiny cleanings by @TotoGaz in #1373
• Reducing visibility of neighborRank in NeighborCommunicator by @TotoGaz in #1375
• Low order acoustic wave equation by @mndiaye24 in #1269
• Feature/borio/vem refactoring by @andrea-borio in #1288
• Fixed compilation warning with clang+hypreGPU on Lassen by @francoishamon in #1380
• WIP - circular dependencies / object libraries build by @bmhan12 in #1352
• Linear algebra cleanup by @klevzoff in #1363
• Update Caliper.rst by @corbett5 in #1391
• PVTPackage and PAMELA submodule names by @rrsettgast in #1396
• Bugfixes for CUDA build (multiphase model kernel wrappers, HypreVector::extract) by @klevzoff in #1397
• Device Packing Optimization by @wrtobin in #1382
• Update host config to resolve Pangea build issue by @sytuannguyen in #1395
• Fix silo output issue #1186 by @sytuannguyen in #1400
• Bugfix/hypre lai by @castelletto1 in #1403
• Parallel synchronization of new embedded surfaces. by @CusiniM in #1354
• Wrong cast in PTP by @TotoGaz in #1404
• Feature/wellbore mesh, Traction BC, convert {tensor input} by @rrsettgast in #1393
• add missing internal wellbore mesh integrated test baselines by @rrsettgast in #1406
• Adding a script to test for xml attribute coverage by @cssherman in #1102
• Adding timestamp information required by visit to vtk files by @cssherman in #1407
• Add LaplaceBase class by @andrea-borio in #1385
• Add pygeosx_tools python package by @cssherman in #1362
• Triaxial Driver by @joshua-white in #1364
• Cleanup of NeighborCommunicator by @rrsettgast in #1414
• LvArray update. by @corbett5 in #1410
• Changed how the finite element kernel objects are constructed. by @corbett5 in #1340
• DofManager cleanup by @klevzoff in #1412
• Cleanup TractionBoundaryCondition by @klevzoff in #1426
• Corbett/hypre cuda fix by @corbett5 in #1441
• Adds support for hypre-cuda via spack. by @corbett5 in #1445
• Fixed bug in compositional residual norm calculation with multiple regions by @francoishamon in #1458
• Consistify temperature units for CO2-brine input by @francoishamon in #1459
• Fixed the bug related to underscores in PAMELA region/surface names by @francoishamon in #1460
• Mgr cleanup + Poromechanics solvers cleanup by @castelletto1 in #1401
• Fix Wedge node ordering by @AntoineMazuyer in #1454
• Improved well error/warning messages by @francoishamon in #1472
• Output 4D fields in VTK by @francoishamon in #1464
• Fix bugs and add unit tests for ComponentMask by @klevzoff in #1473
• Implemented MGR recipes for flow solvers (hybrid FVM, wells) by @francoishamon in #1471
• Implemented CFL numbers in compositional solver by @francoishamon in #1466
• Change multiphase array layouts for CUDA builds by @klevzoff in #1463
• Refactor VEM classes to allow computations on GPU by @andrea-borio in #1419
• VTK output improvements by @klevzoff in #1484
• Update index.rst by @sytuannguyen in #1444
• Proposal for type dispatch by @klevzoff in #1487
• Move volumeBalance to MultipahseporomechanicsKernel. by @CusiniM in #1488
• Dynamic Time History Collection by @wrtobin in #1360
• CMake build cleanup by @bmhan12 in #1433
• Specificy multiple input xml files from command line by @cssherman in #1465
• Remove static_if by @klevzoff in #1493
• Cleanup/settgast/move ptp by @rrsettgast in #1498
• Replace element type strings with enum by @klevzoff in #1499
• Force google's gsutil to use python3 by @TotoGaz in #1509
• Creation of a CoupleSolidModel to handle Poro-Solid-Damage models. by @CusiniM in #1455
• Updating tutorial step08 by @castelletto1 in #1511
• Consider confining stress on SIF calculation and fracture propagation by @WuHuiLLNL in #1486
• Moved resizeFields to registerDataOnMesh in compositional solvers by @francoishamon in #1512
• Docs for Analytical Verification of Drucker-Prager Model by @jhuang2601 in #1474
• Add missing & Remove duplicated files in CMakeLists.txt by @sytuannguyen in #1490
• Add type check for coupledSolid by @CusiniM in #1518
• Fix schema generation crash + minor bugfixes by @klevzoff in #1519
• XML Redundancy Tool by @cssherman in #1497
• Add new cluster target and clean CI by @TotoGaz in #1467
• Remove unused TPLs by @klevzoff in #1527
• Changed default m_component value to -1 in FieldSpecificationBase to … by @jafranc in #1500
• Correct some XMLs by @sytuannguyen in #1526
• Remove warning by @TotoGaz in #1530
• Update solid model documentation by @joshua-white in #1329
• Refactor PAMELA field import by @klevzoff in #1532
• Docs for Solving Wellbore Problems with Poroplastic Solver by @jhuang2601 in #1475
• Fixed bug in total density for surface condition injection rate by @francoishamon in #1536
• Minor doc fixes by @jhuang2601 in #1535
• Prevent VTK counter FPE by @herve-gross in #1540
• [Docs] coupled solid documentation by @jhuang2601 in #1539
• Fix VTK crash with empty subregions by @francoishamon in #1543
• Use of CompressibleSolid - Stencils refactoring - Transmissibility update by @CusiniM in #1311
• Updated LvArray. by @corbett5 in #1551
• Implement Black-Oil model on GPU by @francoishamon in #1537
• Multiphase fluid model cleanup by @klevzoff in #1554
• Fix for reference porosity import by @klevzoff in #1557
• Elastic Orthotropic constitutive model by @sytuannguyen in #1323
• Bugfix for #1550 by @klevzoff in #1556
• Implemented time-dependent well rate and bhp tables by @tang39 in #1468
• Doc for cased wellbore problem by @sytuannguyen in #1542
• Fix #1524 by @klevzoff in #1558
• Change to TotalEnergies by @herve-gross in #1562
• Tutorial updates by @joshua-white in #1538
• Added calls to reserve in transmissibilities precomputation by @francoishamon in #1572
• Move xml files of wellbore problems to benchmark folders by @jhuang2601 in #1574
• Documentation for docker development. by @TotoGaz in #1567
• Doc for deviated elastic wellbore by @sytuannguyen in #1571
• Correct wrong markdown formatting by @TotoGaz in #1577
• Docs/castelletto1/update publications by @castelletto1 in #1578
• Add version output by @klevzoff in #1581
• Proppant solver refactoring by @francoishamon in #1559
• Improve version header generation by @klevzoff in #1583
• Projection EDFM by @CusiniM in #1565
• Add Ninja job pool limit options by @klevzoff in #1590
• Fixed negative cell volume with reverseZ on CPG by @francoishamon in #1589
• Poromechanics kernels refactoring by @castelletto1 in #1596
• Use {fmt} for message formatting by @klevzoff in #1568
• update TPL in Pangea host config by @sytuannguyen in #1602
• Adding Cam-Clay/Delft-Egg Plasticity Models by @shabnamjs in #1336
• Xcode build fix by @joshua-white in #1582
• Add TPL note to QuickStart by @joshua-white in #1605
• [Doc] Verification example with MCC plasticity model by @jhuang2601 in #1575
• [Doc] advanced example for simulating proppant slot test by @jhuang2601 in #1573
• [Doc] Fixed some inconsistencies and misprints in the updated tutorial by @mkhait in #1591
• Keep neighbors with one-way ghost exchange by @klevzoff in #1599
• Updating the input xml parsing, adding two xml unit tests by @cssherman in #1580
• Correct some XMLs by @sytuannguyen in #1608
• Disabled cross-flow when well is shut down by @francoishamon in #1601
• Doc for deviated PoroElastic wellbore by @sytuannguyen in #1585
• Fix broken links in tutorial examples by @jhuang2601 in #1614
• Add pygeosx tutorials and update advanced xml features by @cssherman in #1609
• Implemented contact relation update classes by @francoishamon in #1576
• Bugfixes for time history functionality. by @wrtobin in #1612
• update copyright and author on rtd configuration file by @rrsettgast in #1618
• Allow nested XML includes by @klevzoff in #1617
• Porosity initialization by @CusiniM in #1595
• Automatic allocation of compound constitutive relations by @CusiniM in #1584
• Adding a Pecan CPU target alongside the GPU one. by @TotoGaz in #1625
• Remove memory leak when creating already created HypreVector. by @TotoGaz in #1628
• restructure relationship between tests, examples, benchmarks by @rrsettgast in #1569
• Correct handling of relative paths with multiple input files by @klevzoff in #1634
• Improved/added table relative permeability/capillary pressure by @francoishamon in #1633
• Update "Included Files" section of User Guide by @klevzoff in #1621
• Add MPI barrier after creating composite input XML by @klevzoff in #1639
• [Doc] advanced example of Kirsch wellbore problem by @jhuang2601 in #1635
• [Doc] Verification example of a single fracture under shear compression by @jhuang2601 in #1615
• [Doc] KGD example with toughness dominated by @sytuannguyen in #1610
• Implemented aquifer boundary condition by @francoishamon in #1561
• Repairing a few XML files in the repo by @herve-gross in #1641
• Adding features for Wellbore meshing by @rrsettgast in #1424
• Added aquifer documentation by @francoishamon in #1648
• XML reorganization # 2 by @rrsettgast in #1643
• Linear combination of mass balance equations for compositional multiphase flow solvers by @castelletto1 in #1646
• Update Brew version for MPI by @francoishamon in #1658
• Refactored SourceFlux application in compositional solvers by @francoishamon in #1654
• Add PR and build numbers to deployment locations by @TotoGaz in #1665
• Repair/remove dead symlinks. by @TotoGaz in #1664
• [Docs] Example of KGD fracture with viscosity dominated regime by @sytuannguyen in #1642
• Update TPL for Pangea build by @sytuannguyen in #1649
• Structure of the wave propagator by @mndiaye24 in #1470
• Unify interfaces of FEM and VEM classes by @andrea-borio in #1489
• [docs] on win install v0 by @jafranc in #1622
• [Doc] advanced example of intersected fractures by @jhuang2601 in #1651
• Remove duplicated SolverBase::getDiscretization by @TotoGaz in #1667
• Fix ReadTheDocs builds by @bmhan12 in #1666
• Fixed division by zero in getHistoryMetadata by @francoishamon in #1674
• Feature/castelletto1/lai unit testing by @castelletto1 in #1669
• Implemented hydrostatic equilibrium initial condition by @francoishamon in #1607
• [Doc] extend sneddon problem to different solvers by @jhuang2601 in #1659
• Add solid internal energy. by @CusiniM in #1660
• Linear algebra changes by @klevzoff in #1668
• Added hydrostatic equilibrium documentation by @francoishamon in #1640
• Adding CO2 brine constitutives: brine density and viscosity based on Ezrokhi`s method by @mkhait in #1647
• Implemented new interface for accumulation and volume balance kernels by @francoishamon in #1672
• Contact relationships interface refactoring by @CusiniM in #1662
• Check that PR is assigned by @TotoGaz in #1691
• LAI vector refactor - zero copy assembly by @klevzoff in #1686
• Fix #1694 by @klevzoff in #1695
• Fix advanced problems with LagrangeContact by @jhuang2601 in #1692
• Added logging for boundary conditions in flow solvers by @francoishamon in #1676
• Add host-configs for Sherlock by @klevzoff in #1697
• Change github REST call addresses by @TotoGaz in #1703
• Reduce logs for packaging targets by @TotoGaz in #1705
• Correct Dockerfile indentation. by @TotoGaz in #1707
• Refactor enthalpy and internal energy for CO2 brine by @mkhait in #1689
• Extrinsic mesh data for flow solvers by @francoishamon in #1702
• Move to ubuntu 20.04 and gcc 9 & 10 by @TotoGaz in #1700
• Implemented extrinsic data for multiphase constitutive models by @francoishamon in #1709
• PVTDriver by @joshua-white in #1711
• Fixed Pamela parallel properties import (inside GEOSX) by @francoishamon in #1713
• Fixing petrowiki links by @castelletto1 in #1716
• Implemented new kernel interface for compositional properties by @francoishamon in #1698
• Implemented new kernel interface for flux by @francoishamon in #1696
• [Doc] Mandel's poroelastic problem by @jhuang2601 in #1684
• Remove accessor member variables from flow/well solvers by @francoishamon in #1718
• Reduce visibility of nested structures after refactoring. by @TotoGaz in #1720
• [Feature] implement fault permeability models by @jhuang2601 in #1564
• Added validation example for Problem 1.1 of Class (2009) by @francoishamon in #1721
• Implemented multivariable multidimensional interpolators for future OBL solver by @mkhait in #1714
• Improved the Newton solver for solubility and density in CO2-brine fluid by @francoishamon in #1729
• Implemented J-function capillary pressure by @francoishamon in #1734
• Implemented thermal conductivity models by @francoishamon in #1732
• Fix data access for permuted 2D arrays in functions by @klevzoff in #1740
• Docs/castelletto1/update publications by @castelletto1 in #1744
• Integrated tests on LassenSerial direct solver in all integrated tests by @castelletto1 in #1737
• Improvements towards arbitrary polyhedral grids by @TotoGaz in #1418
• Correct traits and add template getter protection. by @TotoGaz in #1747
• Updating geosx_xml_tools installation method by @cssherman in #1624
• Fixed pure water viscosity computation in CO2BrinePhillipsFluid by @francoishamon in #1739
• Simplification of the return_script in travis. by @TotoGaz in #1749
• Updated tutorial 3 with correct depths by @herve-gross in #1745
• Added warning and error messages in fluid and wells by @francoishamon in #1678
• Upgrade to vtk 9.0.3 by @TotoGaz in #1752
• buildrootdir/installrootdir options in config-build.py by @XL64 in #1741
• Bugfix/castelletto1/issue 1708 by @castelletto1 in #1754
• Enabling multiple mesh bodies by @rrsettgast in #1682
• Unified mass/molar conversions in fluid models by @francoishamon in #1760
• VTK Mesh Generator by @AntoineMazuyer in #1453
• Added flag to disable crossflow in wells by @francoishamon in #1757
• Fixing Tutorial 3 by @herve-gross in #1770
• Removes two double-quotes (XML invalid otherwise) by @herve-gross in #1769
• Correct namespaces which were not respecting camelCase convention by @TotoGaz in #1773
• Remove useless include by @TotoGaz in #1772
• Implemented Killough relative permeability hysteresis by @francoishamon in #1706
• Delay initialization of HistoryOuput by @labesse40 in #1765
• Fix face pressure BC with variable permeability by @klevzoff in #1785
• config file for pangea3 by @XL64 in #1748
• Set an error if non-supported object is requested for Pack. by @TotoGaz in #1782
• VEM support in FEM kernel interface by @andrea-borio in #1690
• [Doc] add validation example based on the experimental study of a KGD fracture by @jhuang2601 in #1780
• Combined multifluid derivatives to reduce fluid kernel wrapper size by @francoishamon in #1779
• Protect against implicit C++ relations by @TotoGaz in #1778
• PressureAtReceiversNp1 modification and SourceValue array for rhs calculation by @labesse40 in #1764
• Activated thermal option in CO2-brine fluid model by @francoishamon in #1755
• Fix a couple minor issues with XML preprocessor by @klevzoff in #1787
• Fix the reported issue (#1623) on running hydraulic fracturing example in tutorial by @jhuang2601 in #1728
• Restored compatibility checks in compositional solvers by @francoishamon in #1793
• Feature/besset pygeosx by @labesse40 in #1704
• Add tpls include in dummy cmake for doc. by @TotoGaz in #1777
• EFEM Linear solver strategies by @CusiniM in #1549
• fix clang10 issue by modifying dependency in unitTests CmakeLists by @labesse40 in #1807
• Revert "fix clang10 issue by modifying dependency in unitTests CmakeLists" by @rrsettgast in #1812
• Improve VisIt Compatibility by @cssherman in #1758
• Documentation: constitutive models in the developer guide by @CusiniM in #1570
• Fixed the computation of the initial total mass density by @francoishamon in #1797
• Update hypre, localIndex to int, add smoke and benchmark cases for ECP problem. by @CusiniM in #1767
• Correct argument order inconsistency. by @TotoGaz in #1820
• Group::m_wrappers[name] can be different from Group::m_wrappers[name]->getName() by @TotoGaz in #1803
• Refactored compositional flow unit tests by @francoishamon in #1809
• Poromechanics kernels refactoring by @castelletto1 in #1600
• Cleaned up isPointInsidePolyhedron by @francoishamon in #1822
• [Doc] Verification example of a radial frac in toughness dominated regime by @jhuang2601 in #1798
• Correct implementation for right-preconditioned BiCGStab by @castelletto1 in #1828
• *packByIndex* functions of Wrapper depends on sizedFromParent() == 1. by @TotoGaz in #1792
• VTK import improvements by @klevzoff in #1791
• Introduce ContactSolverBase by @CusiniM in #1677
• Improve packing naming conventions by @TotoGaz in #1831
• Fixed the double free corruption problem in the unit tests after integration of pygeosx by @sframba in #1813
• Fixed an input validation bug in well controls by @francoishamon in #1837
• Moving sphinx documentation scripts to their own files by @cssherman in #1796
• Moved fluid variables at time n to multifluid constitutive model by @francoishamon in #1827
• Update Publications.rst by @castelletto1 in #1849
• Correct Group::pack by @TotoGaz in #1850
• Improve config-build.py and put cache option at the end of the command line. by @TotoGaz in #1832
• Improved phase internal energy computation by @francoishamon in #1846
• Default pack/unpack for non packable/unpackable data. by @TotoGaz in #1788
• Change default behavior of pack member functions w.r.t. wrapper names by @TotoGaz in #1858
• Better warning message when wrapper is not here. by @TotoGaz in #1864
• Add another verification example of a radial frac developed in viscosity dominated regime by @jhuang2601 in #1821
• Increased readibility for hypre interface by @castelletto1 in #1857
• Fix performance regression of mesh map generation by @klevzoff in #1847
• Verification example of a PKN frac developed in viscosity dominated regime by @jhuang2601 in #1838
• Fixing ordering for pyramids by @castelletto1 in #1866
• Fix missing multibody loops in SolidMechanicsLagrangianFEM solver. by @CusiniM in #1862
• Add energy balance equation to Compositional solver. by @CusiniM in #1225
• Enable Coulomb Friction for EFEM Solvers by @CusiniM in #1840
• Update blt to v0.5.1 by @victorapm in #1879
• Update hdf5 silo conduit by @rrsettgast in #1874
• Improve VTK mesh distribution via ParMETIS by @klevzoff in #1869
• Implemented (field_n,field) flow formulation by @francoishamon in #1880
• Renaming prism to wedge by @castelletto1 in #1885
• Implemented well improvements by @francoishamon in #1886
• PVTPackage update by @francoishamon in #1893
• Computing cell volumes using numerical integration by @castelletto1 in #1887
• Fix VTK element output by @klevzoff in #1895
• Bugfix/castelletto1/pamela wedge import by @castelletto1 in #1896
• Adding check for duplicate named xml entries by @cssherman in #1868
• Add OBL-based solver, analog of Super Engine in DARTS by @mkhait in #1733
• add reinit method to waveSolverBase by @labesse40 in #1808
• Fix misplaced initialization for boundary tags by @acitrain in #1899
• Add a tutorial example for the triaxialDriver by @jhuang2601 in #1894
• Add region list to field synchronization by @CusiniM in #1878
• Using mermaid for class diagrams by @TotoGaz in #1897
• Fix function interface for PorousDelftEgg and PorousModifiedCamClay by @jhuang2601 in #1907
• New CPR-like MGR recipes for compositional flow by @francoishamon in #1712
• Update Publications.rst by @castelletto1 in #1916
• added check on ghostRank when checking if sources and receivers are local by @sframba in #1914
• Little time history reorganization by @TotoGaz in #1873
• Implemented single-phase accumulation kernel class by @francoishamon in #1881
• Update TPLs after hypre patch by @klevzoff in #1917
• Fixed parallel field import in VTKMeshGenerator by @francoishamon in #1918
• Added MGR recipe for thermal compositional solver by @francoishamon in #1836
• Adding pentagonal and hexagonal prism cells by @castelletto1 in #1902
• Fixed single-phase well MGR recipes by @francoishamon in #1921
• Correct wrong make -j command line by @TotoGaz in #1923
• Test plantuml for the doc by @TotoGaz in #1892
• Feature/castelletto1/suppress move logging by @castelletto1 in #1924
• Attempting to make the xml processing mpi aware by @cssherman in #1781
• Seismic traces: bugfix and unit test by @sframba in #1900
• Fixed misleading behavior in source flux boundary condition by @francoishamon in #1931
• update pangea3 host-config file and remove hard-coded Python version by @XL64 in #1938
• Remove mermaid support and use plantuml instead. by @TotoGaz in #1946
• Use Gitlab CI for nightly testing by @bmhan12 in #1888
• Fix some warning when compiled with some version of gcc by @acitrain in #1929
• missing mass intialization by @XL64 in #1954
• Adding an extra string parsing check for attributes by @cssherman in #1928
• Implemented a task for pre/post equilibration in coupled problems by @francoishamon in #1898
• fix OpenBLAS in Pangea3 host-config, add pygeosx to install process by @XL64 in #1951
• Fix VTK memory leak by @TotoGaz in #1950
• Refactored well solvers before coupling with poromechanics by @francoishamon in #1890
• Formatting schema string type names to avoid compiler-related diffs by @cssherman in #1961
• Implement a thermal single phase flow solver by @frankfeifan in #1920
• Simplify smoke test for ProppantSlotTest by @jhuang2601 in #1959
• Implemented VTK/Silo field selection from input file by @francoishamon in #1912
• Format python files with YAPF by @cssherman in #1947
• Azure Pipelines by @bmhan12 in #1969
• Move gcc 10 debug job back to Travis by @bmhan12 in #1988
• [Doc] Verification of induced stresses along a fault in a pressurized reservoir by @jhuang2601 in #1962
• Point to last build of TPL PR #187 by @XL64 in #1966
• LVArray PR that adds GPU sync when converting to numpy array by @XL64 in #1955
• Implemented solver statistics by @francoishamon in #1979
• Reorganize verification examples by @jhuang2601 in #1974
• Adding method to import nodesets in vtk meshes, convert abaqus meshes to vtu by @cssherman in #1942
• Implemented coupled solvers in the new style by @francoishamon in #1978
• Update/hypre chai raja by @rrsettgast in #1949
• Implemented face-based Dirichlet boundary condition in compositional solver by @francoishamon in #1986
• Restore Pangea2 deployment by @TotoGaz in #1999
• Bugfix/castelletto1/tutorial3 by @castelletto1 in #1990
• Add PT-Scotch as a partitioning method option in VTKMesh by @klevzoff in #1996
• Use brew's tap to install precise version of open-mpi by @TotoGaz in #2008
• Bugfix/mbader/wave propagation source injection mpi by @nmbader in #1995
• Implemented output of reservoir statistics by @francoishamon in #1735
• Add VTK Outputs wrappers for PyGEOSX by @paloma-martinez in #1956
• Feature/ascuotto/vtk import by @aure-lily in #1987
• Fix TPL discrepancy between travis and azure by @TotoGaz in #2013
• Replacing PAMELA mesh with VTK mesh by @castelletto1 in #1992
• Compute cell stencils between cell regions only. by @TotoGaz in #2012
• Move fracture fields from EdgeManager to FaceElementSubRegion. by @TotoGaz in #2011
• Re-enable unit tests in OSX CI and fix catalog registration by @klevzoff in #2019
• Improved parsing speed for table files by @klevzoff in #1983
• create a MeshObjectPath class to manage specification of paths to mesh objects by @rrsettgast in #1963
• Cleanup of face/cell boundary condition in flow solvers by @francoishamon in #2001
• Using large VMs travis by @TotoGaz in #2025
• Re-enable object libraries build by @bmhan12 in #2018
• Feature/mbader/second order acoustic pml by @nmbader in #1997
• Use VTK Global IDs if available by @sframba in #2017
• Add FaceBlock abstraction by @TotoGaz in #2034
• Remove hardcoded name "faceElementSubRegion" and "embeddedSurfaceSubRegion". by @TotoGaz in #2036
• Update TPL by @TotoGaz in #2038
• perform difference modulo 2PI on atan2 testings by @XL64 in #2030
• Multi-level discretization + High order Gauss-Lobatto for SEM by @labesse40 in #1324
• Verification of two-phase flow in porous media with Buckley-Leverett problem by @jhuang2601 in #2026
• Enabled wells with poromechanics by @francoishamon in #2005
• Added Newton global damping by default in compositional solvers by @francoishamon in #2039
• add multiBody/multiLevel support to VTK output system by @andrembcosta in #2027
• Implemented small changes in OBL by @francoishamon in #2044
• Rollback Azure Pipelines Jobs To Travis by @bmhan12 in #2037
• split fracture stencil and trigger fracture stencil for imported faults by @TotoGaz in #2048
• Added support for net-to-gross by @francoishamon in #2033
• Remove script and duplicated variables. by @TotoGaz in #2049
• Skipped the shallow mesh copies in the vtk output by @francoishamon in #2050
• travis stage for draft PR by @TotoGaz in #2053
• Fix quick start doc for submodules' fallback. by @TotoGaz in #2055
• Improve performance of ghost map unpacking by @klevzoff in #1989
• Force GEOSX organisation in submodules by @TotoGaz in #2058
• Removed MPI_CXX_BOOL by @corbett5 in #2060
• Fixed a crash in the statistics on GPU by @francoishamon in #2061
• Adding trapped mass as output from compositional statistics by @jafranc in #2052
• Implemented time stepping based on state change by @francoishamon in #2062
• Add prism 7+ support by @TotoGaz in #2051
• Add openmp and/or hdf5 to the dependencyList when needed with slurm MPI by @XL64 in #2067
• Add python tools documentation to sphinx by @cssherman in #1991
• Add support for NVTX in cuda traces using existing instrumentation by @XL64 in #1980
• Remove discretization attribute from SurfaceGenerator. by @CusiniM in #2077
• Increased well verbosity; made well shut down more robust by @francoishamon in #2078
• add support for apple M1 chip by @rrsettgast in #2074
• Renable parallelDevicePolicy in SEM by @XL64 in #2081
• Low order elastic wave equation by @acitrain in #1865
• Use real32 floats in WaveSolver by @XL64 in #2032
• fix compilation with nvtx support enabled by @XL64 in #2096
• Implemented source flux boundary condition in OBL by @francoishamon in #2088
• Reorganize fractures input files by @CusiniM in #2094
• Add ubuntu 22.04 LTS Jammy to travis by @TotoGaz in #2090
• Implement a phase-field nucleation model by @frankfeifan in #1872
• Enabled PEBI cells in single-phase hybrid FVM by @francoishamon in #2095
• Updating sphinx publications by @jhuang2601 in #2105
• Added component fraction local chopping in OBL by @francoishamon in #2099
• Fix outdated rst files by @jhuang2601 in #2112
• Small fix to python script to generate sample mesh files. by @CusiniM in #2113
• Added DOI to readme. by @rrsettgast in #2108
• First version of meshDoctor by @TotoGaz in #2091
• Remove registration of velocity and acceleration in QS simulations. by @CusiniM in #2085
• Added extrinsic mesh data for solid mechanics by @francoishamon in #2098
• Reduce linux capabilities for docker in CI by @TotoGaz in #2120
• LC TPLs rebuild after Ubuntu 22 Added to Travis CI by @bmhan12 in #2104
• Feature/wave propagations/add backward propagation by @XL64 in #1915
• fix lassen debug build by @rrsettgast in #2121
• Added MGR recipes for poromechanics with wells + ILU global smoother by @francoishamon in #2119
• Fix nvcc crash related to fast_float by @klevzoff in #2080
• extract vtk logic into utility files by @untereiner in #2116
• Output and postprocess HDF5 files for HF examples by @jhuang2601 in #2106
• Implemented DAS modeling in elastic wave propagation solver by @francoishamon in #2118
• Generate separate compilation units for solid mechanics kernels by @rrsettgast in #2086
• Modify compositional FaceBasedAssemblyKernel to work with interesecting fractures. by @CusiniM in #2114
• Adding pressure jump stabilization to coupled poromechanics by @ryar9534 in #1901
• Output hypre version by @victorapm in #2124
• Added validation example for Problem 1.2 of Class (2009) by @francoishamon in #1723
• Adding Sherlock CPU target for travis by @jafranc in #2010
• Update Multi-resolution publication data. by @CusiniM in #2140
• Adding version info to the terminal output by @rrsettgast in #2138
• [feature] add Willis-Richards Fault Permeability Model by @jhuang2601 in #1730
• Changed treatment of gravity in poromechanics kernels by @francoishamon in #2043
• fix scotch compilation by @untereiner in #2134
• Adding prism 7 and 8 to existing integrated tests by @castelletto1 in #2141
• Support for more vtk mesh formats by @castelletto1 in #2139
• Rename extrinsicData into field by @TotoGaz in #2147
• Restored logging in VTKMeshGenerator by @francoishamon in #2151
• Fix failing integrated tests on gitlab by @bmhan12 in #2152
• Allow choice of finite element types in Finite Element Dispatch by @sframba in #2149
• add flags to enable fesapi by @untereiner in #2117
• Shared Library by @bmhan12 in #2076
• Feature/karimifard/supported elements unit test by @karimifard in #2150
• Add python unit tests by @cssherman in #2142
• Build should not stop if FESAPI is not defined. by @TotoGaz in #2157
• Add cuda11 to lassen. update hypre. by @rrsettgast in #2164
• Update Adiak by @bmhan12 in #2137
• Optimization of initialization phase by @sframba in #2084
• avoid warning on non reachable statement after return by @XL64 in #2160
• Feature/enable hypre gpu on pangea3 by @XL64 in #2156
• Added face boundary condition to single-phase hybrid FVM by @francoishamon in #2161
• Added validation example for Problem 3.x of Class (2009) - Part 1 by @jafranc in #1853
• Import face block from vtk by @TotoGaz in #2126
• Added faceBlocks to the baselines by @francoishamon in #2171
• Fixed compilation issue on Lassen by @francoishamon in #2181
• Acoustic wave solver optimization by @sframba in #2123
• Added volume, self intersecting and wrong support nodes checks to mesh_doctor. by @TotoGaz in #2158
• Update Pangea3 config for TPL by @TotoGaz in #2167
• Fix vtk labels for stress. by @CusiniM in #2166
• VEM support in small strain solid mechanics solvers by @andrea-borio in #1835
• Update docs for fault models by @jhuang2601 in #2186
• Update the style of single phase face BC by @sytuannguyen in #2183
• Remove feature documentation for PAMELA. by @TotoGaz in #2203
• Added a poromechanics option to solve only mechanics in the burdens by @francoishamon in #2169
• Build travis-ci using ninja by @TotoGaz in #2155
• Remove PAMELA support from GEOSX by @TotoGaz in #2204
• Fix non conformal mesh drawing in doc by @TotoGaz in #2206
• Adding the integrated test for T-shaped fractures. by @TotoGaz in #2198
• Generated separate poromechanics compilation units by @francoishamon in #2208
• Separate denseLinearAlgebra in its own component. by @CusiniM in #2211
• Small improvements for WellControls by @dkachuma in #2192
• Elastic wave solver optimization by @acitrain in #2184
• Fixed the Mandel script in the documentation by @francoishamon in #2219
• Create a relpermDriver to test 3-phase interpolators and tables validity by @jafranc in #2143
• Add polytopal mesh support to single-phase and multi-phase poromechanics by @andrea-borio in #2199
• Fully coupled THM 1: Refactored poromechanics kernels by @francoishamon in #2194
• Refactor/wave solver improvment by @acitrain in #2175
• fix abs namespace by @untereiner in #2218
• Feature: SinglePhasePoromechanics with conforming fractures using lagrange multiplier based contact. by @CusiniM in #2170
• Added error message for disabled thermal fluid model by @francoishamon in #2220
• Sequential coupling in CoupledSolver by @CusiniM in #2202
• Add thermal face boundary condition by @sytuannguyen in #2213
• Changed abs to LvArray::math::abs by @francoishamon in #2229
• Fix for async wait bug #2173 by @kjdugan in #2230
• Remove hardcoded number of degrees of freedom by @acitrain in #2234
• Tag removal in the title of the github issues. by @herve-gross in #1856
• Added dedicated MGR recipe for OBL by @francoishamon in #2237
• EDFM improvements - add CI computation kernel that uses numerical integration. by @CusiniM in #1925
• Fix bug when we get the number of degrees of freedom which implies resize with 0 as dimension by @acitrain in #2239
• Remove OSX job from Travis by @CusiniM in #2241
• Add Reactions for Geochemistry and a ReactiveMultiFluidModel by @CusiniM in #1817
• fix error in NeighborCommunicator by @rrsettgast in #2248
• Added Gaussian elimination F-relaxation for wells in MGR by @francoishamon in #2238
• DofManager small refactoring to avoid registering solid model on fracture subRegions: by @CusiniM in #2247
• Feature/add lifo storage by @XL64 in #2092
• move non mesh parts of importFields to meshManager by @XL64 in #2212
• Fixed bug in MGR recipe by @francoishamon in #2251
• VTK writes ghost cells conditionally by @TotoGaz in #2193
• Fix bug in reinit() for acoustic wave solver (pygeosx) by @acitrain in #2252
• Added reporting of immobile phase mass for compositional simulations by @francoishamon in #2259
• Implemented initialization elastic time step for coupled problems by @francoishamon in #1927
• Use cell block name instead of region name in VTK field import. by @TotoGaz in #2267
• Skipped system setup to reduce data movement to GPU by @francoishamon in #2254
• Add doc and python script for pure thermal diffusion example by @sytuannguyen in #2249
• Modified integrated tests to test property import by @francoishamon in #2268
• Validate well to reservoir connections by @dkachuma in #2269
• Add solver for first order acoustic wave equation by @acitrain in #2191
• Improve doc for docker development. by @TotoGaz in #2276
• Fully coupled THM 2: Implemented a fully coupled single-phase THM solver by @francoishamon in #2195
• Changed FaceManager::MAX_FACE_NODES from 9 to 11. by @MelReyCG in #2261
• Added a thermo-poromechanical consolidation example to the documentation by @francoishamon in #2275
• Fix build issue #2287 by @sytuannguyen in #2288
• Fix compilation warning/error with clang by @untereiner in #2281
• Added a validation function for boundary conditions by @francoishamon in #2291
• Add doc for a cased ThermoElastic wellbore example by @sytuannguyen in #2299
• Improve documentation for FaceBlockABC. by @TotoGaz in #2305
• Fix doxygen path on ReadTheDocs by @bmhan12 in #2260
• Add checks to ensure that MPI_wait calls have completed prior to destruction of container. by @rrsettgast in #2294
• PVT file reading error by @MelReyCG in #2307
• output memory allocations to screen by @rrsettgast in #2314
• Unified residual norm calculations in flow/well solvers by @francoishamon in #1998
• Bugfix/corbett/face collision by @corbett5 in #2321
• Fixed waitOrderedOrWaitAll signature by @francoishamon in #2332
• Update kernelInterface.rst by @IsaacJu-debug in #2333
• add standard install locations by @untereiner in #2278
• Sequentially coupled single phase THM solver by @frankfeifan in #2064
• Remove keep alive message on travis by @TotoGaz in #2319
• Fixed isCoordInObject for cylinder by @francoishamon in #2334
• SinglePhasePoromechanicsConformingFractures: fix issues with closed fractures and stabilization assembly. by @CusiniM in #2285
• Update issue templates to include EPIC issues by @rrsettgast in #2337
• Fully coupled THM 3: Implemented a fully coupled multiphase compositional THM solver by @francoishamon in #2196
• Example of full THM coupling for an open wellbore by @sytuannguyen in #2317
• Modification of the docs about how to fill ElementRegions by @MelReyCG in #2316
• Add Exponential Decay Permeability Model for Fault by @jhuang2601 in #1861
• Changed volume constraint scaling for poromechanics by @francoishamon in #2352
• fix two tutorial examples by @jhuang2601 in #2353
• Fix flow gravity term in fractures by @CusiniM in #2342
• Improve wording for travis jobs by @TotoGaz in #2354
• Rebaseline of integratedTests after merging PR 2342 by @CusiniM in #2368
• Improved WellControls input control by @untereiner in #2351
• Fully coupled THM 4: Added MGR recipes for single-phase and multiphase THM by @francoishamon in #2197
• Provide meaningful string names to Cylinder inputs by @sytuannguyen in #2364
• Fixed bug in the parallel computation of transmissibilities by @francoishamon in #2367
• Configure github's codespaces by @TotoGaz in #2107
• Import DFN from vtk meshes. by @TotoGaz in #2345
• Compute normal with newell's method by @untereiner in #2280
• Disabled time frequency for solver events by @francoishamon in #2380
• Fixed uninitialized variables in flux kernels by @francoishamon in #2387
• Sequential single-phase/multiphase flow-mechanics follow-up by @francoishamon in #2366
• Documentation for GitHub codespaces by @TotoGaz in #2382
• Update .gitmodules by @rrsettgast in #2391
• Change geosx to geos in macros, include guards, namespace... by @TotoGaz in #2392
• Add solver for first order elastic wave equation by @acitrain in #2246
• Negative time simulation for AcousticSEM by @labesse40 in #2292
• ObjectPath XML errors feedback by @MelReyCG in #2341
• New Quartz host configs for clang14.0.6 and gcc12.1.1 by @CusiniM in #2406
• Gitlab - Load python 2 module && ATS - toss4 change by @bmhan12 in #2411
• Proppant smoke tests with gcc by @castelletto1 in #2414
• Example of an elastic Wellbore with imperfect casing-cement-rock interfaces by @sytuannguyen in #2374
• Bugfix/jmeng/validatebchighorder2 by @jiemeng-total in #2396
• Fix the issue #2322 by @sytuannguyen in #2398
• Cleaned up sparsity pattern of pore volume constraint by @francoishamon in #2395
• Expose BoomerAMG options by @victorapm in #2136
• update LC compilers and TPL paths by @rrsettgast in #2415
• Updating ATS by @cssherman in #2265
• Change default linear solver parameters by @victorapm in #2190
• Update ThermoPoroElastic Wellbore Problem by @jhuang2601 in #2412
• Improvements in mesh_doctor by @TotoGaz in #2274
• Make CLion's code width consistent with uncrustify by @TotoGaz in #2421
• update embedded xml using raw string literals by @tbeltzun in #2416
• Remove utility functions from SolidBaseUpdates by @francoishamon in #2419
• Fixed wellbore bug related to useCartesianOuterBoundary by @francoishamon in #2422
• Update and merge viscoplasticity models by @jhuang2601 in #2377
• Output run start/end/ranks by @klevzoff in #2426
• Add anisotropy factors to Carman-Kozeny by @klevzoff in #2425
• update integratedTests submodule hash by @rrsettgast in #2435
• Feature/wrtobin/crusher rocm by @wrtobin in #2453
• Doc for the viscoplastic theory by @sytuannguyen in #2405
• Fix regression in config-build by @XL64 in #2439
• Gitlab ATS changes by @bmhan12 in #2434
• Bugfix for {fmt} cmake by @wrtobin in #2460
• fix compatibility with cmake 3.17 by @XL64 in #2437
• Modify multi-level to allow mpi communication for high order Spectral Element by @acitrain in #2313
• Quick fixes for EDFM discretization by @karimifard in #2420
• Refactored constitutive/fluid folder by @francoishamon in #2441
• Fixed a few xmls by @francoishamon in #2458
• Refactor in flux kernel in prep. for upwinding work by @jafranc in #2459
• Years, days, hrs, min, sec time format. by @CusiniM in #2455
• Fix assert variable scope. by @untereiner in #2433
• Chombo Coupling Fixes by @wrtobin in #2327
• Reduce compilation time by removing some kernel instantiations. by @CusiniM in #2480
• Upwind enthalpy flux for sourceFlux b.c. for producers (positive fluxes) by @CusiniM in #2457
• Simplify .gitignore and add installation dir in codespaces. by @TotoGaz in #2467
• Implemented a check on minimum pore volume by @francoishamon in #2385
• Add the fracture accummulation term in SinglePhasePoromechanicsConformingFractures by @CusiniM in #2478
• Ensure unit tests are enabled by default. by @wrtobin in #2464
• Preparatory work for local chop implementation by @paveltomin in #2468
• Change permutation type in mesh_doctor CLI by @TotoGaz in #2483
• add missing geosx_core_libs removed in #2453 by @XL64 in #2472
• XML string array errors feedback by @MelReyCG in #2357
• Implemented Rachford-Rice and cubic EOS by @francoishamon in #2451
• Tiogia TPL Update / Build Fixes by @wrtobin in #2485
• Fix description for forceDt attribute in Geos doc tutorial 3 by @sytuannguyen in #2497
• Update XMLs & Add script for analytical results of the EDP wellbore example by @sytuannguyen in #2442
• singlePhase thermal flow and thermoporomechanics with fractures by @CusiniM in #2384
• Fix unit test tests for Q3 and Q5 Gauss-Lobatto by @acitrain in #2500
• Enable poroelasticity in hydraulic fracture solver by @CusiniM in #2469
• apply vtk patch for FPE in output routines by @rrsettgast in #2503
• Fix device build by @victorapm in #2506
• Install both geosx and geos executables. by @TotoGaz in #2466
• Github Actions by @bmhan12 in #2400
• fix const-ness compilation error by @untereiner in #2471
• Allow for embedded fractures of arbitrary planar shapes by @andrembcosta in #2479
• Drucker-Prager wellbore with cohesion hardening by @sytuannguyen in #2491
• Bugfix/jmeng/multiregion for highorder by @jiemeng-total in #2522
• Add a pygeosx wrapper to get the initialization state by @paloma-martinez in #2511
• Implement k-value initialisation by @dkachuma in #2492
• Added a warning for porosity above 1 by @francoishamon in #2508
• Implement Cubic EOS derivatives by @dkachuma in #2520
• Improve robustness of MGR strategies for THM problems by @victorapm in #2531
• Stop validation of PeriodicEvent without a target by @dkachuma in #2487
• Implemented RCM to reorder degrees of freedom by @francoishamon in #2499
• C1-PPU implementation by @paveltomin in #2410
• Fix compilation issue by @dkachuma in #2539
• Fixed the use of globalIds in parallel by @francoishamon in #2540
• Fix source injection when using multi region with first order wave propagation solver by @acitrain in #2488
• Split generateMesh into business and geometry parts by @XL64 in #2272
• Github Actions - Check for all job completion by @bmhan12 in #2555
• c++17 support by @CusiniM in #2496
• update blt submodule to v0.5.3 by @rrsettgast in #2518
• Sequential flow-mechanics follow-up, iteration 2 by @francoishamon in #2554
• fix a few typos and 404s by @tbeltzun in #2562
• Added checks for displacement BCs and delayed well transmissibility calculations by @francoishamon in #2564
• Remove erroneous template from non-template member function calls. by @wrtobin in #2583
• Implement negative two-phase flash by @dkachuma in #2484
• Update .gitlab-ci.yml host-config paths, CMake version to 3.23.1 by @bmhan12 in #2563
• Change GEOSX to GEOS in README by @sytuannguyen in #2575
• fix two tutorial examples by @jhuang2601 in #2576
• Feature/change lifo default parameters and fix bugs by @XL64 in #2312
• Added a function to VTKUtilities to avoid empty ranks after redistributeByKdTree by @francoishamon in #2569
• Remove travis by @TotoGaz in #2571
• Use 32bits coordinates inside wave propagators by @XL64 in #2513
• Adding curve checks to integratedTests by @cssherman in #2481
• Update tutorial example for CO2 injection by @jhuang2601 in #2596
• Add reordering steps in Box definition by @jafranc in #2588
• Adding hydraulic fracture examples with poroelasticity by @jhuang2601 in #2521
• Tioga Build Fix, CI Modules, Warning Suppression by @wrtobin in #2530
• Fix bug in reinit for elastic wave solver (pygeosx) by @paloma-martinez in #2587
• Update tpl tag by @CusiniM in #2619
• Github Actions - Separate CUDA builds by @bmhan12 in #2598
• [Testing] Test Github Actions tagged Docker Images by @bmhan12 in #2573
• Improvements to efem kernels by @CusiniM in #2528
• Fix a bug in MappedVector::erase by @klevzoff in #2608
• Update doc for GEOS_TPL_TAG in GHA by @TotoGaz in #2621
• Add pandas to readthedocs requirements.txt by @TotoGaz in #2614
• rebaseline from PR 2608 by @rrsettgast in #2622
• Fix typo when building docker on windows by @TotoGaz in #2620
• update TPL's by @rrsettgast in #2625
• Updating integratedTests Docs by @cssherman in #2618
• Fix validation of injection streams by @dkachuma in #2510
• blt submodule back to v0.5.3 by @wrtobin in #2630
• Adding list of types dispatch capabilities. by @CusiniM in #2495
• Add MGR strategy for SolidMechanicsEmbeddedFractures by @CusiniM in #2537
• Refactoring: centralize loop over test and introduce classes to defined decks by @CusiniM in #2624
• Specifying npm/mermaid versions by @TotoGaz in #2648
• Update codespaces configuration by @TotoGaz in #2627
• Add variable density inside second order acoustic wave solver by @acitrain in #2548
• Build/modify apple builds by @rrsettgast in #2635
• fix fmtlib/fmt padding bug by @tbeltzun in #2650
• Add Group & Wrapper source XML line in errors by @MelReyCG in #2404
• Initialization of coupled solver is added by @sohailwaziri in #2605
• update pugixml to 1.13 by @rrsettgast in #2654
• Make test for functions respect GEOS_ENABLE_TESTS by @TotoGaz in #2655
• simplify computeSeismoTrace - add writeSeismoTrace by @tbeltzun in #2641
• Use residual based criterion in CO2EOSSolver::solve by @paveltomin in #2591
• Modification of trailing face check in SIF calculation to allow for intersecting fractures by @frankfeifan in #2662
• Fix python globbing to fix erroneous *py files by @wrtobin in #2677
• Fix deployment folder issues. by @TotoGaz in #2675
• Modified parallel plates permeability and updated discretization by @karimifard in #2623
• Improve C1PPU implementation by @paveltomin in #2645
• Compositional multiphase fluid properties by @dkachuma in #2542
• Add more context to errors - physicsSolvers/ files by @MelReyCG in #2448
• Add more context to errors - constitutive/ files by @MelReyCG in #2447
• Add more context to errors - other files by @MelReyCG in #2449
• Moving time increment higher up in the hierarchy by @shabnamjs in #2611
• Update CoupledSolver.hpp to log statistics for subsolvers by @sohailwaziri in #2680
• Parallel import of conformal fractures by @TotoGaz in #2580
• Github Actions - Run CUDA jobs only when read to merge by @bmhan12 in #2659
• Documentation of SolidMechanicsEmbeddedFracture solver by @CusiniM in #2617
• Local chop for CompositionalMultiphaseFVM by @paveltomin in #2474
• ReadTheDocs equations by @bmhan12 in #2727
• Verification of viscoplastic deformation with a relaxation problem by @jhuang2601 in #2647
• Adding ATS test filtering, updating docs by @cssherman in #2697
• Documentation for mesh_doctor by @TotoGaz in #2684
• Solve compilation issue with NVCC on some PowerPC machines by @sframba in #2702
• Add a simple check for internal mesh partitioning by @paveltomin in #2711
• More meaningful error message when mesh is missing in the input by @paveltomin in #2712
• Add solver timers for logLevel > 1 by @paveltomin in #2649
• Github Actions - Make CUDA jobs check and PR draft check dynamic by @bmhan12 in #2726
• Fixed bug in VTKUtilities related to sortedArrayManipulation::find by @francoishamon in #2734
• Updating RTD theme by @cssherman in #2742
• Implemented pseudo acoustic wave propagation in vertical transverse isotropic (VTI) media by @Bertbk in #2544
• Fix for issue #2634 "Single Phase Well Prints Incorrect Mass Flow Rate" by @paveltomin in #2736
• Minor docs updates by @paveltomin in #2714
• rewrite wave propagation damping kernels by @tbeltzun in #2730
• support high order hex Q2 output in VTK by @tbeltzun in #2722
• Implemented fixes in water properties computation (density, enthalpy) by @francoishamon in #2686
• More fixes in SurfaceGenerator to allow for intersecting cracks by @frankfeifan in #2705
• check build against TPLs #228 by @tbeltzun in #2717
• Output well rates to a simple csv file (in addition to the already implemented screen output) by @paveltomin in #2737
• Fix EDFM cases from multiphaseFlowFractures by @paveltomin in #2751
• Try to make log output more readable by @paveltomin in #2756
• support higher order ricker wavelets - simplify pulse computation by @tbeltzun in #2642
• Implemented diffusion and (preliminary) dispersion flux by @francoishamon in #2678
• feature/crook5/meshGeneration by @cmcrook5 in #2767
• damping faces/elements consistency by @tbeltzun in #2758

New Contributors

• @andrea-borio made their first contribution in #1220
• @sytuannguyen made their first contribution in #1271
• @mndiaye24 made their first contribution in #1269
• @jhuang2601 made their first contribution in #1474
• @tang39 made their first contribution in #1468
• @mkhait made their first contribution in #1591
• @XL64 made their first contribution in #1741
• @labesse40 made their first contribution in #1765
• @acitrain made their first contribution in #1899
• @frankfeifan made their first contribution in #1920
• @nmbader made their first contribution in #1995
• @paloma-martinez made their first contribution in #1956
• @aure-lily made their first contribution in #1987
• @untereiner made their first contribution in #2116
• @ryar9534 made their first contribution in #1901
• @karimifard made their first contribution in #2150
• @dkachuma made their first contribution in #2192
• @kjdugan made their first contribution in #2230
• @MelReyCG made their first contribution in #2261
• @IsaacJu-debug made their first contribution in #2333
• @jiemeng-total made their first contribution in #2396
• @tbeltzun made their first contribution in #2416
• @paveltomin made their first contribution in #2468
• @sohailwaziri made their first contribution in #2605
• @Bertbk made their first contribution in #2544

Full Changelog: v0.2.0...v1.0.1