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Pradeeban Kathiravelu edited this page May 4, 2023
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Niffler uses major and minor versions to track its progress and significant updates. Pre-releases are typically released off of the dev branch. They are marked as α in the release notes. Other releases are stable releases and are typically released from the main branch.
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Bug fixes
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Attempts at containerization.
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A C-ECHO method for cold-extraction
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More updates to the suvpar and workflows modules.
- Fix documentation and tests.
- Make anonymizations configurable in Suvpar
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NextFlow-based workflows module.
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Statistics in the Suvpar module.
- First complete Suvpar module.
- Refactor png-extraction module.
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Png-extraction bug fix release.
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Fixes GitHub CI workflows.
- Extract only certain headers listed in a featureset.txt for png-extraction.
- More enhancements to the experimental Workflows and SUVPaR modules.
- Extract private tags in the png-extraction module.
- An experimental NifTi extraction module
- An experimental Workflows module
- RTA Extraction module
- SUVPaR for scanner utilization visualization as a new module
- Front-end as a service
- Support a CFIND-ONLY mode for cold-extraction for <PatientID,StudyInstanceUID>, <PatientID,AccessionNumber> extractions.
- Support a CFIND-ONLY mode for cold-extraction PatientID-based extractions.
- Support on-demand extractions based on any 1, 2, or 3 DICOM keywords that support C-FIND and C-MOVE at study level.
- Not backward-compatible with the previous versions of Niffler's cold-extraction.
- Refactor cold-extraction to eliminate code duplication.
- Refactor meta-extraction module for the experimental test framework.
- Refactor png-extraction to eliminate code duplication.
- Front-end for cold-extraction.
- An experimental test framework.
- An experimental rta-extraction module.
- Bug-fixes to 0.7.1 png-extraction.
- Front-end module with an experimental front-end for png-extraction.
- An admin mode in the front-end to create accounts.
- Fix metadata extractor progress tracking.
- Enhancements to png-extraction
- Cold-extraction gets cli arguments.
- Scanner utilization gets an Eaglescope dashboard
- Add call to process join and close to make sure pool is terminated in png-extraction.
- Fix some corner cases on image extraction module in parallel processing.
- DICOM Anonymization as the 5th module of Niffler (along with the existing modules: app-layer, cold-extraction, meta-extraction, and png-extraction).
- Dicom-anonymization as an experimental module.
- Sanity check for empty csv entries.
- Cold-extraction with <EMPI>.
- Fixes real-time extraction with private tags for scanner utilization project.
- An installation script for Niffler.
- Png-extraction with both 16 and 8 bit.
- Enable private tag extraction for meta-extraction.
- Ability to extract from the tag for meta-extraction.
- Anonymize the file name in png-extraction.
- Enable flexible hierarchy for the storage of png-extraction.
- Refactor png-extractor
- Make split into chunks in png-extraction a configurable parameter.
- Optimizations to the png-extraction module.
- Make the number of processes for the png-extraction configurable.
- An email sender to inform the completion of cold-extraction and png-extraction.
- Skip accessions with no valid EMPI.
- Refactor meta-extraction and png-extraction.
- Distributed version of png-extraction with slurm and multiple local processes.
- Remove hard-coded values from meta-extraction
- Pickle with a human-readable protocol for png-extraction.
- Refactor module structure to follow Apache Maven 3 folder style.
- Allow safe parallel executions of on-demand extraction.
- More descriptive error logs
- Automatically stop the on-demand extraction processes when the retrieval is complete.
- Bug fixes
- A night-only mode for on-demand extractions
- Refactor cold-extraction module
- On-demand extraction extended to include date-based extractions, <EMPI, date>
- Starts from 0.1.0 (rather than 0.0.1) as this is a direct import from an existing Sharmalab private repository.
- First Alpha Release as a public repository.
- meta-extraction module for real-time DICOM receiver based on DCM4CHE storescp and pydicom.
- cold-exraction module for on-demand DICOM receiver with <EMPI, Accession> or <Accession>
- png-extraction module based on pydicom to convert DICOM to PNG.
- Scanner utilization scripts
- Scanner clock-calibration scripts
- IVC Filter scripts