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- variant-callers Public
Scripts and containers to run the variant callers originally used in ONCOLINER
- prepy-wrapper Public
Wrapper for pre.py from Illumina's hap.py package. It is used to preprocess VCF files in order to normalize SNVs and indels for downstream analysis.
- variant-extractor Public
Deterministic and standard extractor of SNVs, indels and structural variants (SVs) from VCF files.
- bioinfo-pipelines Public
Bioinformatics pipelines to analyse whole-genome / whole exome sequencing data for tumors