BridgITplus pipeline accepts BridgIT output as an input and produces a list of protein sequences as an output.
The data to reproduce the case studies is provide with the supplementary material of the publicaiton.
To run BridgIT plus pipeline, the following steps have to be made.
- Get BridgIT results from https://lcsb-databases.epfl.ch/pathways/Bridgit
- activate your jupyter notebook
- Run BridgIT_output_to_BridgITplus_input.ipynb
- Run BridgIT_plus.ipynb
Your results are in merged_cleaned_Bridgit_{your_reaciton_id}