Substantial bug fixes

Thanks to @andersonbrookee for help running through code and identifying bugs.

v0.6.6 - No changes, just need a new version for pypi?

v0.6.6-beta

I don't even...

v0.6.5 minor bug fixes

v0.6.5-beta

Merge branch 'Bugfixes'

Release for Publication

Add status updates (#17)

* Added status for multi-species GenBank files

* added status for blast import

* More progress indicators, bug fix in run.analyze()

Release for Publication Draft

Working scripts used for analysis in upcoming publication. Not particularly user-friendly.