NLP-Plant-Phenotypes

datasets available at:

For preprocessing, merging and analysis of datasets are available in this repository:

Pre-reqs

1. openjdk
2. gcc and R modules for running the scripts

The next step is to Install the required packages

pip install -r requirements.txt

To directly run, use

bash pipeline.sh

To run it as python script, go to the notebooks directory

python analysis.py
python analysis_dataset_composition.py
cd ..
cd scripts/
python rglob_and_stack.py
cd .. 
cd quoats/
python plots.py

To run it as jupyter notebook, go to notebooks directory and run analysis, analysis_data_composition first. Then go to scripts directory and run rglob_and_stack.py and plots.py from quoats.

FEEDBACK

Any queries or feedback. Contact ianrbraun@gmail.com OR jyothi@iastate.edu.