Merge pull request #16 from Deltares/write_forcing

Write forcing

.github/workflows/tests.yml

@@ -16,14 +16,14 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        os: ["windows-latest"] #, "macos-latest", "ubuntu-latest"]
-        python-version: ["3.8", "3.9"] # fix tests to support older versions
+        os: ["windows-latest"] #, "ubuntu-latest", "macos-latest"]
+        python-version: ["3.9"] # fix tests to support older versions
 
     steps:
       - uses: actions/checkout@v2
       - uses: conda-incubator/setup-miniconda@v2
         with:
-          environment-file: envs/hydromt-wflow.yml
+          environment-file: envs/test_env.yml
           python-version: ${{ matrix.python-version }}
           activate-environment: hydromt-wflow
 
@@ -32,8 +32,8 @@ jobs:
          conda info
          conda list
 
-      - name: Intall hydromt_wflow
-        run: flit install
+      - name: Install hydromt_wflow
+        run: flit install --deps all
 
       - name: Test
         run: python -m pytest --verbose --cov=hydromt_wflow --cov-report xml

docs/contributing.rst

@@ -4,4 +4,4 @@ Contributing
 .. _contributing:
 
 To contribute to HydroMT and the wflow plugin, please follow the 
-`HydroMT contribution guidelines <https://hydromt.readthedocs.io/en/latest/contributing.html>`_.
+`HydroMT contribution guidelines <https://deltares.github.io/hydromt/latest/contributing.html>`_.

docs/index.rst

@@ -10,7 +10,7 @@ This plugin provides an implementation for the
 `Wflow <https://github.com/Deltares/Wflow.jl>`_ hydrological modelling framework. It details the different steps and explains how to 
 use HydroMT to easily get started and work on your own Wflow model.
 
-For detailed information on HydroMT itself, you can visit the `core documentation <https://hydromt.readthedocs.io/en/latest/>`_.
+For detailed information on HydroMT itself, you can visit the `core documentation <https://deltares.github.io/hydromt/latest/index.html>`_.
 
 Documentation
 =============

docs/installation.rst

@@ -75,4 +75,4 @@ For Linux:
 
     $ flit install -s
 
-For more information about how to contribute, see `HydroMT contributing guidelines <https://hydromt.readthedocs.io/en/latest/contributing.html>`_.
+For more information about how to contribute, see `HydroMT contributing guidelines <https://deltares.github.io/hydromt/latest/contributing.html>`_.

docs/user_guide/sediment/build_configuration.rst

@@ -5,7 +5,7 @@ Model configuration
 
 This HydroMT plugin provides an implementation for the wflow_sediment model in order to build, update or clip from 
 command line. Specific details on the HydroMT CLI methods can be found in 
-https://hydromt.readthedocs.io/en/latest/user_guide/cli.html 
+https://deltares.github.io/hydromt/latest/user_guide/cli.html 
 
 Configuration file
 ------------------
@@ -33,7 +33,7 @@ are three ways for the user to select which data libraries to use:
   P-drive). In the command lines examples below, this is done by adding either **-dd** or **--deltares-data** 
   to the build / update command line.
 - Finally, the user can prepare its own yaml libary (or libraries) (see 
-  `HydroMT documentation <https://hydromt.readthedocs.io/en/latest/user_guide/data.html>`_ to check the guidelines). 
+  `HydroMT documentation <https://deltares.github.io/hydromt/latest/user_guide/data.html>`_ to check the guidelines). 
   These user libraries can be added either in the command line using the **-d** option and path/to/yaml or in the **ini file** 
   with the **data_libs** option in the [global] sections.
 
@@ -47,7 +47,7 @@ data libraries are set, you can build a model by using:
     activate hydromt-wflow
     hydromt build wflow_sediment path/to/built_model "{'basin': [x, y]}" -i wflow_sediment_build.ini -d data_sources.yml -vvv
 
-The recommended `region options <https://hydromt.readthedocs.io/en/latest/user_guide/cli.html#region-options>`_ 
+The recommended `region options <https://deltares.github.io/hydromt/latest/user_guide/cli.html#region-options>`_ 
 for a proper implementation of the wflow_sediment model are:
 
 - basin
@@ -79,7 +79,7 @@ To clip a smaller model from an existing one use:
     activate hydromt-wflow
     hydromt clip wflow_sediment path/to/model_to_clip path/to/clipped_model "{'basin' [1001]}" -vvv
 
-As for building, the recommended `region options <https://hydromt.readthedocs.io/en/latest/user_guide/cli.html#region-options>`_ 
+As for building, the recommended `region options <https://deltares.github.io/hydromt/latest/user_guide/cli.html#region-options>`_ 
 for a proper implementation of the clipped model are:
 
 - basin

docs/user_guide/sediment/index.rst

@@ -6,7 +6,7 @@ several :ref:`components <model_components_sed>` of a wflow sediment model such
 The :ref:`main interactions <model_config_sed>` are available from the HydroMT Command Line Interface and allow you to configure 
 HydroMT in order to build or update or clip wflow sediment models. Finally for python users, all wflow sediment objects such as forcing, 
 staticmaps etc. are available as :ref:`model attributes <model_attributes_sed>` including some wflow specific ones (on top of the 
-`HydroMT model API attributes <https://hydromt.readthedocs.io/en/latest/api/api_model_api.html>`_).
+`HydroMT model API attributes <https://deltares.github.io/hydromt/latest/advanced/model_api.html>`_).
 
 .. toctree::
    :maxdepth: 1

docs/user_guide/wflow/build_configuration.rst

@@ -5,7 +5,7 @@ Model configuration
 
 This HydroMT plugin provides an implementation for the wflow model in order to build, update or clip from 
 command line. Specific details on the HydroMT CLI methods can be found in 
-https://hydromt.readthedocs.io/en/latest/user_guide/cli.html 
+https://deltares.github.io/hydromt/latest/user_guide/cli.html 
 
 Configuration file
 ------------------
@@ -33,7 +33,7 @@ are three ways for the user to select which data libraries to use:
   P-drive). In the command lines examples below, this is done by adding either **-dd** or **--deltares-data** 
   to the build / update command line.
 - Finally, the user can prepare its own yaml libary (or libraries) (see 
-  `HydroMT documentation <https://hydromt.readthedocs.io/en/latest/user_guide/data.html>`_ to check the guidelines). 
+  `HydroMT documentation <https://deltares.github.io/hydromt/latest/user_guide/data.html>`_ to check the guidelines). 
   These user libraries can be added either in the command line using the **-d** option and path/to/yaml or in the **ini file** 
   with the **data_libs** option in the [global] sections.
 
@@ -47,7 +47,7 @@ data libraries are set, you can build a model by using:
     activate hydromt-wflow
     hydromt build wflow path/to/built_model "{'basin': [x, y]}" -i wflow_build.ini -d data_sources.yml -vvv
 
-The recommended `region options <https://hydromt.readthedocs.io/en/latest/user_guide/cli.html#region-options>`_ 
+The recommended `region options <https://deltares.github.io/hydromt/latest/user_guide/cli.html#region-options>`_ 
 for a proper implementation of this model are:
 
 - basin
@@ -78,7 +78,7 @@ To clip a smaller model from an existing one use:
     activate hydromt-wflow
     hydromt clip wflow path/to/model_to_clip path/to/clipped_model "{'basin' [1001]}" -vvv
 
-As for building, the recommended `region options <https://hydromt.readthedocs.io/en/latest/user_guide/cli.html#region-options>`_ 
+As for building, the recommended `region options <https://deltares.github.io/hydromt/latest/user_guide/cli.html#region-options>`_ 
 for a proper implementation of the clipped model are:
 
 - basin

docs/user_guide/wflow/index.rst

@@ -6,7 +6,7 @@ several :ref:`components <model_components>` of a wflow model such as topography
 The :ref:`main interactions <model_config>` are available from the HydroMT Command Line Interface and allow you to configure 
 HydroMT in order to build or update or clip wflow models. Finally for python users, all wflow objects such as forcing, 
 staticmaps etc. are available as :ref:`model attributes <model_attributes>` including some wflow specific ones (on top of the 
-`HydroMT model API attributes <https://hydromt.readthedocs.io/en/latest/api/api_model_api.html>`_).
+`HydroMT model API attributes <https://deltares.github.io/hydromt/latest/api/api_model_api.html>`_).
 
 .. toctree::
    :maxdepth: 1

environment.yml

@@ -9,7 +9,7 @@ dependencies:
   - black
   - bottleneck
   - cartopy # to run examples
-  - dask>=2.30
+  - dask
   - descartes # to run examples
   - entrypoints
   - flit>=3.2

envs/hydromt-wflow.yml

@@ -11,7 +11,7 @@ dependencies:
   - black
   - bottleneck
   - cartopy # to run examples
-  - dask>=2.30
+  - dask
   - descartes # to run examples
   - entrypoints
   - flit>=3.2

envs/test_env.yml

@@ -0,0 +1,40 @@
+name: hydromt-wflow
+
+channels:
+  - conda-forge
+
+# note that these are the developer dependencies,
+# FIXME change to minimal version after hydromt is on conda-forge
+dependencies:
+  - affine
+  - click
+  - black
+  - bottleneck
+  - dask
+  - entrypoints
+  - flit>=3.2
+  - gdal>=3.1
+  - geopandas
+  - netcdf4
+  - numba
+  - numpy
+  - openpyxl
+  - pandas
+  - pip
+  - pyflwdir>=0.4.7
+  - pygeos>=0.8
+  - pytest # tests
+  # - pytest-benchmark # test > unused
+  - pytest-cov # tests
+  - pytest-timeout # test
+  - python>=3.7
+  - rasterio
+  - requests
+  - scipy
+  - toml
+  - xarray
+  - zarr
+  - pip:
+    # - hydroengine > test without for speed
+    - git+https://github.com/Deltares/hydromt.git
+

examples/wflow_piave_subbasin/staticgeoms/reservoirs.geojson

@@ -2,7 +2,7 @@
 "type": "FeatureCollection",
 "crs": { "type": "name", "properties": { "name": "urn:ogc:def:crs:OGC:1.3:CRS84" } },
 "features": [
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-{ "type": "Feature", "properties": { "Hylak_id": 1355379.0, "Lake_name": null, "Country": "Italy", "Continent": "Europe", "Poly_src": "SWBD", "Lake_type": 2.0, "waterbody_id": 3367.0, "Area_avg": 620000.0, "Shore_len": 5.74, "Shore_dev": 2.06, "Vol_avg": 42800000.0, "Vol_res": 42.8, "Vol_src": 2.0, "Depth_avg": 69.0, "Dis_avg": 2.366, "Res_time": 209.4, "Elevation": 400.0, "Slope_100": 22.52, "Wshd_area": 106.7, "xout": 12.083333333333348, "yout": 46.166666666666664, "G_GRAND_ID": 3367.0, "Dam_height": 91.0, "G_DAM_LEN_": 157.0, "G_CAP_MCM": 42.8, "Capacity_max": null, "Capacity_norm": 42800000.0, "Capacity_min": null, "G_DEPTH_M": 71.3, "G_MAIN_USE": "Hydroelectricity", "G_QUALITY": "2: Good", "watprovID": 694.0, "ID": 2351.0, "GRanD_DAM_": "Mis", "GRanD_RIVE": "Mis", "GRanD_NEAR": "Belluno", "db_Status Active Yes/No": null, "db_Max Level (m), HL": 69.0, "db_Max Surface Area (ha), HL": 62.0, "db_Max Surface Area (ha), JRC": 61.80601946, "db_Min Surface Area (ha), JRC": 0.1246, "db_Normal Surface Area (ha), JRC": 59.05535, "db_Count frequency Normal Area": 15.0, "db_Max Capacity (Mcm), HL": 42.8, "db_Min Capacity (Mcm), GR": null, "db_Normal Capacity (Mcm), GR": 42.8, "db_Main Use, GR": "Hydroelectricity", "db_Water Province": 694.0, "db_HydroLakes_ID": 1355379.0, "db_Dam height [m]": 91.0, "ResMaxVolume": 42800000.0, "ResSimpleArea": 617162.72084793425, "ResDemand": 1.183, "ResMaxRelease": 9.464, "ResTargetFullFrac": "1", "ResTargetMinFrac": "0.4987747796346783" }, "geometry": { "type": "MultiPolygon", "coordinates": [ [ [ [ 12.065709635416908, 46.166832682292181 ], [ 12.067766655816285, 46.165862087674043 ], [ 12.072180582682506, 46.165333658854536 ], [ 12.072494710286662, 46.164994574653122 ], [ 12.075326334635633, 46.164424913194807 ], [ 12.076348198784956, 46.163322211371906 ], [ 12.079171956380435, 46.162783203125343 ], [ 12.07970635308186, 46.162206217448386 ], [ 12.08139417860275, 46.161672092014271 ], [ 12.081527777778035, 46.161250000000337 ], [ 12.077772488064511, 46.161383463542052 ], [ 12.073094753689531, 46.162119140625407 ], [ 12.067495930989764, 46.163586154514348 ], [ 12.064200846354368, 46.166113009983007 ], [ 12.059695773654767, 46.166395399305884 ], [ 12.057562255859693, 46.170578070746842 ], [ 12.055550265842214, 46.173050130208651 ], [ 12.054298638238151, 46.175224066840656 ], [ 12.05507636176236, 46.175550130208705 ], [ 12.057551676432524, 46.174682617187898 ], [ 12.058714870877111, 46.172881401910104 ], [ 12.059727511935932, 46.172227647569798 ], [ 12.065709635416908, 46.166832682292181 ] ] ] ] } }
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 ]
 }