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Pull requests: DataBiosphere/azul

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Pull requests list

Upgrade dependencies 2024-05-27 (#6293, #6173) backup:gitlab [process] PR requires backing up GitLab instances deploy:gitlab [process] PR requires deploying `gitlab` component deploy:shared [process] PR requires deploying `shared` component orange [process] Done by the Azul team
#6305 opened May 29, 2024 by dsotirho-ucsc Loading…
17 of 70 tasks
Index lm7 in LungMAP (#6249) orange [process] Done by the Azul team reindex:lmprod [process] PR requires reindexing lmprod reindex:partial [process] PR allows for (de)indexing a specific source or catalog
#6304 opened May 29, 2024 by dsotirho-ucsc Loading… 100+
@hannes-ucsc
3
Fix: date_created column no longer exists in AnVIL tables (#6302) API API change affecting callers base [process] Another PR needs to be rebased before merging this one orange [process] Done by the Azul team reindex:anvildev [process] PR requires reindexing anvildev reindex:anvilprod [process] PR requires reindexing anvilprod
#6303 opened May 28, 2024 by nadove-ucsc • Draft 100+
2
Make dcp38 the default catalog on prod (#6286) no sandbox [process] PR will not be tested in the sandbox orange [process] Done by the Azul team reindex:dev [process] PR requires reindexing dev reindex:partial [process] PR allows for (de)indexing a specific source or catalog reindex:prod [process] PR requires reindexing prod
#6301 opened May 28, 2024 by dsotirho-ucsc Loading… 100+
@dsotirho-ucsc
5
Fix: Increase threshold for "unauthorized" metric alarm (#6220) deploy:shared [process] PR requires deploying `shared` component orange [process] Done by the Azul team
#6297 opened May 28, 2024 by achave11-ucsc • Draft 100+
2
Fix: Misconfigured Access-Control-Allow-Origin Header (DataBiosphere/azul-private#17) orange [process] Done by the Azul team
#6296 opened May 28, 2024 by dsotirho-ucsc Loading… 100+
@hannes-ucsc
3
Remove outdated hammerbox ES section in opensearch_updates.md (#6272) 0 reviews [process] Lead didn't request any changes no sandbox [process] PR will not be tested in the sandbox orange [process] Done by the Azul team
#6280 opened May 22, 2024 by achave11-ucsc Loading… 100+
@dsotirho-ucsc
4
Generate Avro schema from AnVIL schema (#6109) 2 reviews [process] Lead requested changes twice chained [process] PR needs to based of develop before merging orange [process] Done by the Azul team reindex:anvildev [process] PR requires reindexing anvildev reindex:anvilprod [process] PR requires reindexing anvilprod reqs [process] PR includes commit requiring ``make requirements``
#6268 opened May 18, 2024 by nadove-ucsc Loading… 100+
20
Fix: Race between layer and Lambda update (#5927) 2 reviews [process] Lead requested changes twice orange [process] Done by the Azul team
#6259 opened May 14, 2024 by dsotirho-ucsc Loading… 100+
33
Fix: S3 log forwarder lambda times out (#5622) 0 reviews [process] Lead didn't request any changes orange [process] Done by the Azul team
#6217 opened Apr 30, 2024 by achave11-ucsc Loading… 100+
53
Support for HCA data_use_restriction (#6131) 4+ reviews [process] Lead requested changes four times or more API API change affecting callers orange [process] Done by the Azul team reindex:anvildev [process] PR requires reindexing anvildev reindex:anvilprod [process] PR requires reindexing anvilprod reindex:dev [process] PR requires reindexing dev reindex:prod [process] PR requires reindexing prod
#6207 opened Apr 26, 2024 by dsotirho-ucsc Loading… 100+
24
Create PFB-based verbatim manifest format for HCA (#6122) API API change affecting callers orange [process] Done by the Azul team
#6163 opened Apr 12, 2024 by nadove-ucsc • Draft 100+
3
Fix: Alarm api_unauthorized for HeadBucket from AWS Config (#6134) 1 review [process] Lead requested changes once deploy:shared [process] PR requires deploying `shared` component orange [process] Done by the Azul team
#6150 opened Apr 9, 2024 by dsotirho-ucsc Loading… 100+
8
Fix: Health lambas still time out occasionally (#6097) 1 review [process] Lead requested changes once orange [process] Done by the Azul team
#6118 opened Apr 2, 2024 by achave11-ucsc Loading… 100+
17
Fix: Can't use curl to download a single manifest in one invocation (#5918) 4+ reviews [process] Lead requested changes four times or more API API change affecting callers orange [process] Done by the Azul team
#6099 opened Mar 26, 2024 by dsotirho-ucsc Loading… 100+
61
Announce maintenance in stable deployments (#5979) orange [process] Done by the Azul team
#6095 opened Mar 26, 2024 by achave11-ucsc • Draft 100+
1
Update to Python 3.12.x (#5736) orange [process] Done by the Azul team reqs [process] PR includes commit requiring ``make requirements`` upgrade [process] PR includes commit requiring manual upgrade
#5951 opened Feb 10, 2024 by dsotirho-ucsc • Draft 100+
2
Different rate limits depending on HTTP method (#5555) 4+ reviews [process] Lead requested changes four times or more orange [process] Done by the Azul team
#5869 opened Jan 19, 2024 by dsotirho-ucsc Loading… 100+
31
Ensure S3 signed manifest URLs don't expire prematurely (#5503) 0 reviews [process] Lead didn't request any changes orange [process] Done by the Azul team
#5812 opened Dec 19, 2023 by dsotirho-ucsc Loading… 100+
8
Eliminate azul.terra.TDRClient.TDRSource (#5524) orange [process] Done by the Azul team
#5635 opened Oct 19, 2023 by nadove-ucsc • Draft 100+
2
Fix: Manifest request in prod failed due to a service execution timeout (#5528) orange [process] Done by the Azul team
#5595 opened Oct 5, 2023 by achave11-ucsc • Draft 100+
4
Route SNS notifications through a Lambda function (#5246) 3 reviews [process] Lead requested changes thrice orange [process] Done by the Azul team upgrade [process] PR includes commit requiring manual upgrade
#5445 opened Aug 2, 2023 by achave11-ucsc Loading… 100+
40
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