Update env

.gitignore

@@ -13,6 +13,7 @@ secrets.env
 
 # Ignore scratchpad notebook
 /scratch.ipynb
+/.virtual_documents
 
 ##############################################################################
 # Auto-generated ignores

environment.yml

@@ -3,6 +3,7 @@ channels:
   - conda-forge
 dependencies:
   - _anaconda_depends=2023.03=py310_0
+  - accessible-pygments=0.0.4=pyhd8ed1ab_0
   - alabaster=0.7.12=pyhd3eb1b0_0
   - anaconda=custom=py310_1
   - anyio=3.5.0=py310hecd8cb5_0
@@ -16,6 +17,7 @@ dependencies:
   - astroid=2.14.2=py310hecd8cb5_0
   - astropy=5.1=py310h4e76f89_0
   - asttokens=2.0.5=pyhd3eb1b0_0
+  - async-lru=2.0.2=pyhd8ed1ab_0
   - atomicwrites=1.4.0=py_0
   - attrs=21.4.0=pyhd8ed1ab_0
   - automat=20.2.0=py_0
@@ -59,8 +61,8 @@ dependencies:
   - curl=7.88.1=h6df9250_1
   - cycler=0.11.0=pyhd3eb1b0_0
   - cytoolz=0.12.0=py310hca72f7f_0
-  - dask=2022.7.0=py310hecd8cb5_0
-  - dask-core=2022.7.0=py310hecd8cb5_0
+  - dask=2023.4.1=py310hecd8cb5_0
+  - dask-core=2023.4.1=py310hecd8cb5_0
   - dataclasses=0.8=pyh6d0b6a4_7
   - datashader=0.14.4=py310hecd8cb5_0
   - datashape=0.5.4=py310hecd8cb5_1
@@ -69,7 +71,7 @@ dependencies:
   - defusedxml=0.7.1=pyhd3eb1b0_0
   - diff-match-patch=20200713=pyhd3eb1b0_0
   - dill=0.3.6=py310hecd8cb5_0
-  - distributed=2022.7.0=py310hecd8cb5_0
+  - distributed=2023.4.1=py310hecd8cb5_0
   - docopt=0.6.2=py_1
   - docstring-to-markdown=0.11=py310hecd8cb5_0
   - docutils=0.17.1=py310h2ec42d9_3
@@ -110,8 +112,8 @@ dependencies:
   - imageio=2.26.0=py310hecd8cb5_0
   - imagesize=1.4.1=py310hecd8cb5_0
   - imbalanced-learn=0.10.1=py310hecd8cb5_0
-  - importlib-metadata=4.11.3=py310hecd8cb5_0
-  - importlib_metadata=4.11.3=hd3eb1b0_0
+  - importlib-metadata=6.0.0=py310hecd8cb5_0
+  - importlib_metadata=6.0.0=hd3eb1b0_0
   - importlib_resources=5.2.0=pyhd3eb1b0_1
   - incremental=21.3.0=pyhd3eb1b0_0
   - inflection=0.5.1=py310hecd8cb5_0
@@ -139,12 +141,15 @@ dependencies:
   - jupyter=1.0.0=py310hecd8cb5_8
   - jupyter-book=0.13.1=pyhd8ed1ab_0
   - jupyter-cache=0.4.3=pyhd8ed1ab_0
+  - jupyter-lsp=2.1.0=pyhd8ed1ab_0
   - jupyter-server-mathjax=0.2.6=pyh5bfe37b_1
   - jupyter-sphinx=0.3.2=pyhd8ed1ab_1
-  - jupyter_client=7.3.4=py310hecd8cb5_0
+  - jupyter_client=8.1.0=py310hecd8cb5_0
   - jupyter_console=6.6.2=py310hecd8cb5_0
   - jupyter_core=5.2.0=py310hecd8cb5_0
-  - jupyter_server=1.23.4=py310hecd8cb5_0
+  - jupyter_events=0.6.3=py310hecd8cb5_0
+  - jupyter_server=2.5.0=pyhd8ed1ab_0
+  - jupyter_server_terminals=0.4.4=pyhd8ed1ab_1
   - jupyterlab=3.5.3=py310hecd8cb5_0
   - jupyterlab_pygments=0.1.2=py_0
   - jupyterlab_server=2.16.5=py310hecd8cb5_0
@@ -226,7 +231,9 @@ dependencies:
   - myst-parser=0.15.2=pyhd8ed1ab_0
   - nbclassic=0.5.2=py310hecd8cb5_0
   - nbclient=0.5.13=py310hecd8cb5_0
-  - nbconvert=6.5.4=py310hecd8cb5_0
+  - nbconvert=6.5.3=pyhd8ed1ab_0
+  - nbconvert-core=6.5.3=pyhd8ed1ab_0
+  - nbconvert-pandoc=6.5.3=pyhd8ed1ab_0
   - nbdime=3.2.1=pyhd8ed1ab_0
   - nbformat=5.7.0=py310hecd8cb5_0
   - ncurses=6.4=hcec6c5f_0
@@ -250,7 +257,8 @@ dependencies:
   - openpyxl=3.0.10=py310hca72f7f_0
   - openssl=3.1.0=h8a1eda9_3
   - packaging=22.0=py310hecd8cb5_0
-  - pandas=1.5.3=py310h3ea8b11_0
+  - pandas=2.0.1=py310h5e4fcda_1
+  - pandoc=2.12=hecd8cb5_3
   - pandocfilters=1.5.0=pyhd3eb1b0_0
   - panel=0.14.3=py310hecd8cb5_0
   - param=1.12.3=py310hecd8cb5_0
@@ -267,7 +275,7 @@ dependencies:
   - pillow=9.4.0=py310hcec6c5f_0
   - pip=22.3.1=py310hecd8cb5_0
   - platformdirs=2.5.2=py310hecd8cb5_0
-  - plotly=5.9.0=py310hecd8cb5_0
+  - plotly=5.14.1=pyhd8ed1ab_0
   - pluggy=1.0.0=py310hecd8cb5_1
   - ply=3.11=py310hecd8cb5_0
   - pooch=1.4.0=pyhd3eb1b0_0
@@ -305,6 +313,7 @@ dependencies:
   - pyodbc=4.0.34=py310he9d5cce_0
   - pyopenssl=23.0.0=py310hecd8cb5_0
   - pyparsing=3.0.9=py310hecd8cb5_0
+  - pyperclip=1.8.2=pyhd8ed1ab_2
   - pyqt=5.15.7=py310he9d5cce_0
   - pyqtwebengine=5.15.7=py310he9d5cce_0
   - pyrsistent=0.18.0=py310hca72f7f_0
@@ -314,11 +323,14 @@ dependencies:
   - python=3.10.11=he7542f4_0_cpython
   - python-dateutil=2.8.2=pyhd3eb1b0_0
   - python-fastjsonschema=2.16.2=py310hecd8cb5_0
+  - python-json-logger=2.0.7=py310hecd8cb5_0
+  - python-lmdb=1.4.1=py310hcec6c5f_0
   - python-lsp-black=1.2.1=py310hecd8cb5_0
   - python-lsp-jsonrpc=1.0.0=pyhd3eb1b0_0
   - python-lsp-server=1.7.1=py310hecd8cb5_0
   - python-slugify=5.0.2=pyhd3eb1b0_0
   - python-snappy=0.6.1=py310hcec6c5f_0
+  - python-tzdata=2023.3=pyhd8ed1ab_0
   - python.app=3=py310hca72f7f_0
   - python_abi=3.10=3_cp310
   - pytoolconfig=1.2.5=py310hecd8cb5_1
@@ -327,7 +339,7 @@ dependencies:
   - pyviz_comms=2.0.2=pyhd3eb1b0_0
   - pywavelets=1.4.1=py310h6c40b1e_0
   - pyyaml=6.0=py310h6c40b1e_1
-  - pyzmq=23.2.0=py310he9d5cce_0
+  - pyzmq=25.0.2=py310hcec6c5f_0
   - qdarkstyle=3.0.2=pyhd3eb1b0_0
   - qstylizer=0.2.2=py310hecd8cb5_0
   - qt-main=5.15.8=h1d3b3f8_6
@@ -341,6 +353,8 @@ dependencies:
   - regex=2022.7.9=py310hca72f7f_0
   - requests=2.28.1=py310hecd8cb5_0
   - requests-file=1.5.1=pyhd3eb1b0_0
+  - rfc3339-validator=0.1.4=py310hecd8cb5_0
+  - rfc3986-validator=0.1.1=py310hecd8cb5_0
   - rope=1.7.0=py310hecd8cb5_0
   - rtree=1.0.1=py310hecd8cb5_0
   - ruamel.yaml=0.17.26=py310h6729b98_0
@@ -382,7 +396,7 @@ dependencies:
   - sphinxcontrib-serializinghtml=1.1.5=pyhd3eb1b0_0
   - sphinxext-rediraffe=0.2.7=pyhd8ed1ab_0
   - spyder=5.4.1=py310hecd8cb5_0
-  - spyder-kernels=2.4.1=py310hecd8cb5_0
+  - spyder-kernels=2.4.3=py310hecd8cb5_0
   - sqlalchemy=1.4.39=py310hca72f7f_0
   - sqlite=3.40.1=h880c91c_0
   - stack_data=0.2.0=pyhd3eb1b0_0
@@ -407,7 +421,7 @@ dependencies:
   - tomli=2.0.1=py310hecd8cb5_0
   - tomlkit=0.11.1=py310hecd8cb5_0
   - toolz=0.12.0=py310hecd8cb5_0
-  - tornado=6.1=py310hca72f7f_0
+  - tornado=6.2=py310hca72f7f_0
   - tqdm=4.64.1=py310hecd8cb5_0
   - traitlets=5.7.1=py310hecd8cb5_0
   - transformers=4.24.0=py310hecd8cb5_0
@@ -438,14 +452,14 @@ dependencies:
   - yapf=0.31.0=pyhd3eb1b0_0
   - zeromq=4.3.4=h23ab428_0
   - zfp=0.5.5=he9d5cce_6
-  - zict=2.1.0=py310hecd8cb5_0
+  - zict=2.2.0=py310hecd8cb5_0
   - zipp=3.11.0=py310hecd8cb5_0
   - zlib=1.2.13=hfd90126_4
   - zope=1.0=py310hecd8cb5_1
   - zope.interface=5.4.0=py310hca72f7f_0
   - zstd=1.5.2=hcb37349_0
   - pip:
-      - jupyter-book-to-htmlbook==1.0.8
+      - git+https://github.com/SamLau95/jupyter-book-to-htmlbook.git
       - jupyterlab-myst==1.2.0
       - mpmath==1.2.1
       - pyqt5-sip==12.11.0

textbook_utils.py

@@ -42,7 +42,7 @@
 np.set_printoptions(threshold=20, precision=2, suppress=True)
 pd.set_option("display.max_rows", 7)
 pd.set_option("display.max_columns", 8)
-pd.set_option("precision", 2)
+pd.set_option("display.precision", 2)
 # stops scientific notation for pandas
 # pd.set_option('display.float_format', '{:.2f}'.format)