This software integrates state-of-the-art tools to conduct genome-centric metagenomics for researchers who are unfamiliar with command line tools or have limited time in learning bioinformatics.
- Easy to use: only one required parameter (the working directory).
- Flexible: seperated modules for customized workflows.
- Free from manual intervention: all tools and parameters are selected automatically to optimize the performance and results.
- One-stop solution: from raw sequences to publishable figures.
Install Anaconda following the offical document. Or,
wget https://repo.anaconda.com/archive/Anaconda3-2021.05-Linux-x86_64.sh
# The latest version of the installer can be found at https://repo.anaconda.com/archive/
./Anaconda3-*-Linux-x86_64.sh
Then clone a local copy of the current repository
# Git should be installed first. If not, run
sudo apt-get install git
# Clone the repository
git clone https://github.com/DOieGYuan/easyG.git
Simply run ./install_easyG.sh to automatically install all required tools and databases.
See details about the installtion in our wiki.
First, build all prerequisites by simply run build.sh or install all the dependencies manually
source build.sh
Then, run the pipeline
soure EasyGCMeta [myfolder]
Done
Please feel free to contact linyuan@smail.nju.edu.cn
to be continued ...(First release aim at 2021-08-18)