DILiS-lab
Popular repositories
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pyproteonet
pyproteonet PublicPython package for imputation, peptide-to-protein aggregation as well as in silico data creation of proteomics data with a specific focus on the development and evaluation of imputation methods in …
Python 1
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SimbaML
SimbaML PublicSimbaML is an all-in-one framework for integrating prior knowledge of ODE models into the ML process by synthetic data augmentation. It allows for the convenient generation of realistic synthetic d…
Python
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pmotif_lib
pmotif_lib PublicForked from timgarrels/pmotif_lib
Perform motif detection, either with traditional frequency, or with positional metrics for each graphlet occurrence.
Python
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pmotif_analytics
pmotif_analytics PublicForked from timgarrels/MA_analytics
Collection of tools to run analyses based on the pmotif_lib py-package
HTML
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GNN_imputer
GNN_imputer PublicGraph Neural Network Driven Imputation of Missing Abundances in Mass Spectrometry-Based Proteomics
Python
Repositories
- opt-synthdata-4tl Public
This is the code repository for the paper "Optimizing ODE-derived Synthetic Data for Transfer Learning in Dynamical Biological Systems".
- pyproteonet Public
Python package for imputation, peptide-to-protein aggregation as well as in silico data creation of proteomics data with a specific focus on the development and evaluation of imputation methods in proteomics. Also provides proteomics specific imputation methods based on graph neural networks.
- GNN_imputer Public
Graph Neural Network Driven Imputation of Missing Abundances in Mass Spectrometry-Based Proteomics
- SimbaML Public
SimbaML is an all-in-one framework for integrating prior knowledge of ODE models into the ML process by synthetic data augmentation. It allows for the convenient generation of realistic synthetic data by sparsifying and adding noise. Furthermore, our framework provides customizable pipelines for various ML experiments, such as transfer learning.
- pmotif_analytics Public Forked from timgarrels/MA_analytics
Collection of tools to run analyses based on the pmotif_lib py-package
- pmotif_lib Public Forked from timgarrels/pmotif_lib
Perform motif detection, either with traditional frequency, or with positional metrics for each graphlet occurrence.
- SimbaML_examples Public
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