Skip to content

Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.

License

Notifications You must be signed in to change notification settings

DHMC-EDIT/WSI-GTFE

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

5 Commits
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

WSI-GTFE

Code is undergoing refactoring from our original command line interface. We will update our code base with a fully functioning CLI. For now, we have included some example notebooks for getting started on your own datasets in the notebooks section. For now, this repository outlines analyzing inductive Whole Slide Graph patch-level classification, but various portions of this framework may be changed for self-supervised and whole-slide level objectives.

Feel free to check out our article, here: https://www.biorxiv.org/content/10.1101/2020.08.01.231639v1

Mapper implementation was adapted / slightly refactored from: https://github.com/crisbodnar/dgm

Select Figures from Paper:
figure1 figure2 figure3 figure4

About

Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages

  • Jupyter Notebook 100.0%