Code for CaMKII measures the passage time to coordinate behavior and motivation

Contents:

ACR ASAP:

Code used in analyzing time series voltage imaging experiments on raw fluoresence (MATLAB)

Calcium imaging:

Code used analyzing .tif files corresponding to time series calcium imaging data after XXM stimulation (MATLAB)

FretFlim:

Code used for extracting fluorescence lifetime data from .mat files storing relevant variables using a ScanImage spin-off written by Bernardo Sabatini and Gary Yellen (MATLAB)

Proportions:

Python code using the pymc package to sample from the posterior distribution for estimating proportions. Just need to run mcmcm_indep.py if you have the packages installed.

align_time_series.m

MATLAB script for taking an array of cells, each containing a n x 2 array in which the first row is the t_axis relative to some event, and aligning them within time bins.