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autoBIDS

Description:

LNS automated MATLAB script for EEG data BIDS generation using EEGLAB BIDS plugin (see below in Dependencies).

For more information on how to get started, please refer to the Wiki user manual.

⚠️ Currently only compatible with raw .bdf (BioSemi) files

Dependencies

PLUGINS Description
EEGLAB v2021.1 Main software that manages most of the preprocessing and analyses toolboxes described in the table below
bids-matlab-tools v5.4 BIDS is the plugin enabling the generation of BIDS metadata
bids-validator v1.1 This plugin performs validation of the generated BIDS metadata according to Openneuro
CleanLine v2.0 This plugin adaptively estimates and removes sinusoidal (e.g. line) noise from your ICA components or scalp channels using multi-tapering and a Thompson F-statistic

Isolated functions:

The dependencies are already included in the Functions folder and loaded automatically.

Authors

Corentin Aurèle Wicht, MSc
SNSF Doc.CH PhD student
corentin.wicht@unifr.ch, corentinw.lcns@gmail.com
Laboratory for Neurorehabilitation Science
University of Fribourg, Switzerland

Michael Mouthon, PhD
Laboratory Engineer
michael.mouthon@unifr.ch
Laboratory for Cognitive and Neurological Sciences
University of Fribourg, Switzerland

Cite the repository

C.A. Wicht, M. Mouthon, autoBIDS, (2021), GitHub repository, https://github.com/CorentinWicht/autoBIDS
NEED A DOI!!!!

License

Creative Commons License
This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.

See the LICENSE.md file for details

Acknowledgments:

PD Dr. Lucas Spierer from the University of Fribourg provided substantial support and advices regarding theoretical conceptualization as well as access to the workplace and the infrastructure required to successfully complete the project.

Fundings

This project was supported by a grant from the Velux Foundation (Grant #1078 to LS); from the Swiss National Science Foundation (Grant #320030_175469 to LS); and from the Research Pool of the University of Fribourg to PD Dr. Lucas Spierer.

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LNS automated script for EEG data BIDS generation using EEGLAB BIDS plugin

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