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ComPath/ComPath-HGNC

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ComPath HGNC Build Status Coverage Status Documentation Status

This package contains the gene family information that can be included in ComPath.

Citation

Gray KA, Yates B, Seal RL, Wright MW, Bruford EA. genenames.org: the HGNC resources in 2015. Nucleic Acids Res. 2015 Jan;43(Database issue):D1079-85. doi: 10.1093/nar/gku1071. http://www.ncbi.nlm.nih.gov/pubmed/25361968

Installation Current version on PyPI Stable Supported Python Versions MIT License

compath_hgnc can be installed easily from PyPI with the following code in your favorite terminal:

$ python3 -m pip install compath_hgnc

or from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/compath/compath_hgnc.git@master

Setup

HGNC can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import compath_hgnc
>>> compath_hgnc_manager = compath_hgnc.Manager()
>>> compath_hgnc_manager.populate()

Command Line Utility

compath_hgnc populate

Acknowledgements