📸 v0.90.14

Oceananigans v0.90.14

Diff since v0.90.13

Merged pull requests:

• Fix interpolator for left side of periodic domain (#3549) (@jagoosw)
• Extend operations for two ZeroFields (#3567) (@zhihua-zheng)

Closed issues:

• Interpolation over periodic dimension returns strange result? (#3114)

v0.90.13

Oceananigans v0.90.13

Diff since v0.90.12

Merged pull requests:

• Fix RiBasedVerticalDiffusivity (#3510) (@glwagner)
• Add Whitley & Wenegrat 2024 (#3546) (@navidcy)
• Alignment and minor changes (#3548) (@navidcy)
• Fix bug when using Lagrangian particles on Flat topologies (#3550) (@Jamie-Hilditch)
• Update deps (#3553) (@navidcy)
• Fix typo in doc @ref in one_dimensional_diffusion.jl (#3554) (@Datseris)
• Bugfix on FieldTimeSeries interpolation (#3558) (@simone-silvestri)
• Adding tracer advection in a Single column model (#3559) (@simone-silvestri)
• (0.90.13) Bump version (#3562) (@glwagner)

Closed issues:

• Example/tutorial on checkpointing (#1136)
• GridFittedBottom.immersed_condition needs to be documented (#2905)
• Problematic behavior of the RiBasedVerticalDiffusivity (#3283)
• Lagrangian particles on Flat topology (#3545)
• Noise below the mixed layer when using AnisotropicMinimumDissipation (#3560)

🏍️ v0.90.12

Oceananigans v0.90.12

Diff since v0.90.11

Merged pull requests:

• PCG uses provided grid's halo size instead of hardcoding halo = (3, 3, 1) (#3094) (@navidcy)
• Fill halos of conformal cubed sphere grid coordinates and metrics in a single pass (#3488) (@siddharthabishnu)
• Default partition in Distributed (#3496) (@simone-silvestri)
• Add support for AbstractArray Forcing (#3498) (@glwagner)
• Allow interpolation on Distributed architectures (#3499) (@simone-silvestri)
• Revisit SplitExplicitFreeSurface user-interface and Docs + use SplitExplicitFreeSurface as the default when appropriate (#3503) (@navidcy)
• Enhance immersed boundary grid docs (#3505) (@navidcy)
• Adds last_Δt to Clock (#3508) (@jagoosw)
• Allow testing of just a single file (#3511) (@navidcy)
• File splitting in NetCDFOutputWriter when max_filesize is exceeded (#3512) (@josuemtzmo)
• (0.90.12) Bugfix for SpitExplicitFreeSurface on MultiRegionGrids and make SpitExplicitFreeSurface the default + don't allow more halos than interior points (#3514) (@navidcy)
• Generalize file splitting for output writers (#3515) (@glwagner)
• Add Chen et al. 2024 (#3517) (@navidcy)
• Don't ship docs with Manifest (#3521) (@navidcy)
• Tests for splitting output files using TimeInterval (#3523) (@josuemtzmo)
• Add interpolation for fields on ImmersedBoundaryGrids (#3524) (@simone-silvestri)
• Friendlier KH example for GPU (#3528) (@navidcy)
• Minor bug fix so that Δzᶜᶜᶜ(... , ibg::PCBIBG) works for grids with flat dims (#3530) (@navidcy)
• Add a bottom boundary layer example using CATKE (#3531) (@glwagner)
• Add info about models that support BackgroundFields (#3532) (@navidcy)
• Automatically try to reshape arrays when encountering DimensionMismatch (#3535) (@glwagner)
• Fix examples in ConformalCubedSphereGrid docs and convert to doctests (#3539) (@navidcy)
• Use adaptive timestep in two-dimensional turbulence example (#3540) (@navidcy)
• Update climacommon to 2024_04_05 (#3541) (@Sbozzolo)
• Show methods display information about the advection scheme(s) (#3542) (@navidcy)
• Bump julia-actions/setup-julia from 1 to 2 (#3544) (@dependabot[bot])

Closed issues:

• Splitting NetCDF output with NetCDFOutputWriter (#2967)
• PGC FreeSurface solver hardcodes 3 halo points and breaks if not (#3093)
• Fill velocity halos in a single pass for ConformalCubedSphereGrid (#3201)
• Some issue(s) with SplitExplicitFreeSurface (#3238)
• Default free surface solver: SplitExplicit or Implicit (#3289)
• Slow initialization after updating to v0.90.0 (#3381)
• Warnings regarding loop not unrolled when constructing model (#3494)
• What if we just wanna run one test file? (#3507)
• Change the default free-surface solver for MultiRegionGrids to SplitExplicitFreeSurface (#3513)
• Grid's halo size can exceed its interior (#3516)
• Remove Manifest.toml from docs (#3520)
• Scalar Indexing is not allowed on GPU array (KH instability) (#3522)
• Should have an option to apply Forcing only at specific nodes? (#3525)
• Compare ImmersedBoundary with tilted geometry (#3526)
• show for models should display the advection scheme too (#3534)
• bottom_heights from the immersed boundary method don't look right with a coarse grid (#3537)
• 2D turbulence example is outputting NaNs (#3538)

📺 v0.90.11

Oceananigans v0.90.11

Diff since v0.90.10

Merged pull requests:

• Add internal tide example in Docs (#3132) (@navidcy)
• (0.90.11) Tests for a distributed Immersed boundary grid + fix some on_architecture bugs (#3487) (@simone-silvestri)
• Remove few @unrolls that sneaked in with #3404 (#3501) (@navidcy)
• Show method for HydrostaticFreeSurfaceModel summarizes advection schemes (#3504) (@navidcy)

Closed issues:

• Creating a new doc example with drag on immersed boundaries (#3148)
• show method for HydrostaticFreeSurfaceModel does not show the advection scheme (#3197)
• Bugs in the Tilted Bottom Boundary Layer Example Code (#3412)

v0.90.10

Oceananigans v0.90.10

Diff since v0.90.9

Merged pull requests:

• Support FunctionField as a Field.operand, similar to AbstractOperation (#3228) (@glwagner)
• Move distributed buildkite CI to the new-central queue (#3489) (@navidcy)
• (0.90.10) on_architecture method for all Oceananigans' types (#3490) (@simone-silvestri)
• Adds compute! method for collections (#3491) (@tomchor)
• Remove misleading comment (#3493) (@simone-silvestri)
• Use Julia v1.10.2 for CI (#3495) (@navidcy)
• Change default scheme for HydrostaticSphericalCoriolis (#3500) (@glwagner)

Closed issues:

• Creating a method to convert Function Fields to Fields (#3226)
• KernelFunctionOperation produces incorrect result when given a NamedTuple with an AbstractOperation (#3455)
• LatitudeLongitudeGrid may have incorrect metrics for y-Periodic domains (#3465)

😽 v0.90.9

Oceananigans v0.90.9

Diff since v0.90.8

Merged pull requests:

• Use Julia v1.10 for CI (#3403) (@navidcy)
• Scaling improvement for the distributed HydrostaticFreeSurfaceModel (#3404) (@simone-silvestri)
• (0.90.9) Fix a sign error in CATKE's implicit dissipative buoyancy flux (#3484) (@glwagner)

Closed issues:

• Are we actually @unrolling when we think we are? (#3374)
• maximum(abs, v) doesn't work on GPU in Julia 1.10.0 with grid size larger than (10, 10, 10) (#3427)

v0.90.8

Oceananigans v0.90.8

Diff since v0.90.7

Merged pull requests:

• (0.90.8) Rules for Time interpolation / extrapolation for FieldTimeSeries and InterpolatedField (#3450) (@glwagner)

Closed issues:

• FieldTimeSeries does not adapt correctly on GPU (#3472)

v0.90.7

Oceananigans v0.90.7

Diff since v0.90.6

Merged pull requests:

• Some type stabilization to get a new gradient from Enzyme (#3360) (@glwagner)
• Fixes error when reducing Fields with a condition on ImmersedBoundaryGrids (#3440) (@tomchor)
• Better docstring rendering (#3448) (@navidcy)
• Bump up SeawaterPolynomials to v0.3.4 (#3451) (@glwagner)
• Remove Enzyme from core dependency (#3452) (@navidcy)
• Update Docs/Model setup pages + fix bug with callsite=TendencyCallsite() in Callbacks (#3454) (@navidcy)
• Enhance Checkpointer + TendencyCallsite callback example (#3461) (@navidcy)
• More illustrative example for checkpointing (#3469) (@navidcy)
• (0.90.7) Remove argument splatting in hydrostatic free surface tendency kernel entry functions (#3477) (@glwagner)

Closed issues:

• Fusing kernels for calculating diagnostics to improve performance (#1483)
• The definition of gravity_unit_vector apparently doesn't match it's name (#2356)
• Building WENO advection with immersed grid fails due to grid size (#3137)
• Doc page for Callbacks outdated and does not appear under Docs/Model Setup (#3275)
• Ambiguous method error when calculating a conditional Average() with an ImmersedBoundaryGrid (#3439)
• 2D turbulence example missing fontsize keyword in Label call (#3442)
• WENOVectorInvariant method cleanup? (#3449)
• Callback with callsite=TendencyCallsite() doesn't work (#3456)
• Can we rewrite the pressure equation and calculate each term in it? (#3459)
• restore_from_checkpoint is deprecated? (#3462)
• Checkpointer required properties includes :architecture despite it can be inferred from grid (#3463)
• @fluidnumerics-joe the CI doesn't work... something's wrong with the Manifest you pushed. (#3470)

🎿 v0.90.6

Oceananigans v0.90.6

Diff since v0.90.5

Merged pull requests:

• Refactor Fields.interpolate to make sense for Nothing locations and Flat directions - take 2 (#3395) (@simone-silvestri)
• Enhance docstring for Integral (#3446) (@tomchor)
• (0.90.6) Bump (#3447) (@glwagner)

Closed issues:

• interpolate doesn't work with Nothing locations (#3356)

📟 v0.90.5

Oceananigans v0.90.5

Diff since v0.90.4

Merged pull requests:

• Change StokesDrift example in docs to a wavepacket moving with group velocity (#3425) (@navidcy)
• Improve references/citations in docs + enhances 3D Stokes drift example (#3430) (@navidcy)
• Add few papers in the "Papers and preprints using Oceananigans" (#3437) (@navidcy)
• Add missing adapt_structure for stokes drift (#3441) (@jagoosw)
• Use CairoMakie v0.11 for example/docs (#3443) (@navidcy)

Closed issues:

• Three-dimensional StokesDrift docstring example may be misleading (#3422)
• Non-standard function throws an error when used in a KernelFunctionOperation on the GPU (#3438)
• Question for 3D Stokes example (#3444)