This is the first public release of ClearMap 2 as described in Kirst et al. Cell 2020.

ClearMap is a toolbox for the analysis and registration of volumetric
data from cleared tissues.

Wobbly-Stitcher

Stitch TB data sets non-rigidly.

TubeMap

Extract vasculature and other tubular networks from TB data.

Extract neuronal activity marker and cell shapes.

ClearMap was originally designed and developed by
Christoph Kirst.

Scripts and specific applications were developed by Nicolas Renier
and Christoph Kirst.

The deep vessel filling network was designed and created by Sophie Skriabine
and Christoph Kirst.

The documentation was written by Christoph Kirst.
and Nicolas Renier.

Contributions are always very welcome.

This project is licensed under the GNU General Public License v3.0.

For other options contact the author Christoph Kirst
(christoph.kirst.ck@gmail.com).