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A snakefile to run repeatmasker on genomes in a scatter/gather approach.

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ChaissonLab/RepeatMasking

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T2TLib

T2TLib

 
 

AppendOutFile.py

AppendOutFile.py

 
 

CombineFasta.py

CombineFasta.py

 
 

CombineMask.cpp

CombineMask.cpp

 
 

ConcatFiles.py

ConcatFiles.py

 
 

CountRep.cpp

CountRep.cpp

 
 

DivideFasta.py

DivideFasta.py

 
 

HardMask.cpp

HardMask.cpp

 
 

MakeRMSKJson.py

MakeRMSKJson.py

 
 

Makefile

Makefile

 
 

MaskBed.cpp

MaskBed.cpp

 
 

MaskedToBed.cpp

MaskedToBed.cpp

 
 

RepeatMaskGenome.epp.snakefile

RepeatMaskGenome.epp.snakefile

 
 

WriteDivideFastaOutput.py

WriteDivideFastaOutput.py

 
 

repeat_masker.out.header

repeat_masker.out.header

 
 

t2t_repeat_mask.json

t2t_repeat_mask.json

 
 

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A snakefile to run repeatmasker on genomes in a scatter/gather approach.

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