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cpchecker

A simple command-line tool to check for failed cellprofiler jobs on eddie.

To install:

python setup.py install --user

To use:

cpchecker config.yaml

Where config.yaml is the cptools configuration file used to create the cellprofiler job.

cpchecker looks in the results directory for missing results files, and returns a the task IDs of jobs which have not produced any results.

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Check for failed cellprofiler jobs on eddie3

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