Skip to content
@CMUSchwartzLab

CMUSchwartzLab

Popular repositories

  1. cancer-phylogenetics-prognostic-prediction cancer-phylogenetics-prognostic-prediction Public

    Improving Personalized Prediction of Cancer Prognoses with Clonal Evolution Models

    Python 20 3

  2. TUSV-ext TUSV-ext Public

    Python 14 4

  3. RAD RAD Public

    Robust and Accurate Deconvolution

    Jupyter Notebook 9 2

  4. RADs RADs Public

    Jupyter Notebook 9 1

  5. FISH_deconvolution FISH_deconvolution Public

    code implementing methods for pooling bulk and single cell data and FISH data for copy number deconvolution

    Python 8

  6. NND NND Public

    Neural network deconvolution

    Jupyter Notebook 6

Repositories

Showing 10 of 15 repositories
  • Mase-phi Public

    Marker selection strategies for ctDNA guided by phylogenetic inference

    Python 1 MIT 1 0 0 Updated May 10, 2024
  • Sc-TUSV-ext Public

    Sc-TUSV-ext: Tumor evolutionary tree reconstruction from single-cell DNA-seq data of single nucleotide variants (SNV), copy number alterations (CNA) and structural variants (SV).

    Python 2 0 0 0 Updated Jan 29, 2024
  • StudyDesignOptimization Public
    Jupyter Notebook 0 0 0 0 Updated Oct 22, 2023
  • TUSV-ext Public
    Python 14 MIT 4 1 0 Updated Sep 29, 2023
  • MosaicSim Public
    Jupyter Notebook 4 MIT 1 1 0 Updated Sep 6, 2023
  • SimGenome Public

    Simulation of the somatic variations (structural variations, copy number variations and single nucleotide variations) in whole genome based on tumor phylogenetic trees. SimGenome is the simulation method used in TUSV-ext project.

    Python 2 0 0 0 Updated Jun 19, 2023
  • ConTreeDP Public

    Consensus method for tumor history tree based on directed partitions using dynamic programming

    Python 5 CC0-1.0 0 0 0 Updated Oct 24, 2022
  • RADs Public
    Jupyter Notebook 9 1 0 0 Updated Mar 13, 2022
  • JointClustering Public

    The joint clustering method for single cell miFISH and single cell whole genome copy numbers

    Python 4 CC0-1.0 0 0 0 Updated Nov 18, 2021
  • RAD Public

    Robust and Accurate Deconvolution

    Jupyter Notebook 9 MIT 2 0 0 Updated Oct 18, 2020
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…