Skip to content

Releases: CDCgov/datasets-sars-cov-2

v0.7.2

10 Jun 19:10
ee93027
Compare
Choose a tag to compare
  • Parallelized the CI testing
  • More fixing on the hashsums
  • Will try three times to download a nucleotide accession in case it comes as zero byte

v0.7.1

08 Jun 20:23
14869ae
Compare
Choose a tag to compare
  • Fixing some hashsums
  • Added make clean

v0.7

07 Jun 20:51
ef0ca92
Compare
Choose a tag to compare
v0.7 Pre-release
Pre-release

Bumping this version to help address some reviewer comments

v0.6.3

23 Feb 21:37
Compare
Choose a tag to compare

Addressed the issue that bbtools did not validate some reads in the nonvoi/voic dataset.

v0.6.2

25 Jan 16:54
Compare
Choose a tag to compare

New:

  • Took advice from @BioWilko to fix truncated reads by not using the --gzip option on fastq-dump in #13
  • Hashsums changed as a result for all datasets
  • Hashsums varied with gzip metadata and so we had to check hashsums on uncompressed reads
  • Hashsums have been recalculated accordingly
  • Unit testing filled up the available space for one dataset and so unit testing has been altered to chunk 20 at a time
  • new option available --compressed

v0.5.3

18 Nov 15:18
Compare
Choose a tag to compare
  • Updated accessions for Coronahit datasets per #10
  • Corrected some hashsums
  • GitHub Actions minor modifications
    • Better logging on t/01_download.bats
    • Running full test only on new versions to save on GitHub Actions minutes
    • Running sample test only for all git push events

v0.4

21 Oct 17:35
Compare
Choose a tag to compare

New dataset QC fails (the sixth dataset!)

v0.3

14 Sep 15:50
aad7a21
Compare
Choose a tag to compare

Five SARS-CoV-2 datasets!