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24 Open 130 Closed
24 Open 130 Closed
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Issues list

Installation fails for Python versions >= 3.9 bug Something isn't working
#275 opened Jul 21, 2023 by ayush9pandey
GeneralPropensity saves parameter names differently than other propensities
#274 opened Dec 29, 2022 by WilliamIX
Species representation adds "_" between characters in species.attributes
#273 opened Dec 13, 2022 by WilliamIX
Component.set_species needs to take compartment keyword and set it appropriately.
#272 opened Dec 13, 2022 by WilliamIX compartments
Degradation spelled incorrectly in function names
#271 opened Jun 10, 2022 by ayush9pandey
Bug in deterministic model
#270 opened May 5, 2022 by bad-ants-fleet
SBML file does not have initial conditions set correctly
#268 opened Mar 31, 2022 by ayush9pandey
Adding Attributes to a DNA_construct results in a warning
#263 opened Dec 22, 2021 by WilliamIX
Component creates Species using set_species but doesn't allow a compartment attribute bug Something isn't working
#256 opened Aug 4, 2021 by ayush9pandey
2
@zjuradoq
DNA_construct equality compares __repr__ instead of object instance
#237 opened May 14, 2021 by dr3y
_create_global_parameter in sbmlutil does not do SBML uniqueness checks
#236 opened May 14, 2021 by ayush9pandey
1
Example Notebook 2: Example 5 Typo
#233 opened Feb 23, 2021 by WilliamIX
@WilliamIX
DNAAssembly with OneStepGeneExpression breaks when used with a default Mixture
#230 opened Feb 13, 2021 by sclamons
3
Global Mechanism feedback
#228 opened Feb 13, 2021 by WilliamIX
"degradation" is misspelled in the names of two global mechanisms. good first issue Good for newcomers
#226 opened Feb 12, 2021 by sclamons
5
Fancy CRN and ODE Text Output
#223 opened Jan 27, 2021 by WilliamIX Low Priority
remaining issues with Sphinx
#218 opened Dec 19, 2020 by zoltuz
1 of 5 tasks
Low Priority
convenient way to handle parameters during reaction building
#213 opened Dec 18, 2020 by zoltuz Low Priority
1
Add Rules to BioCRNpyler enhancement New feature or request
#193 opened Oct 1, 2020 by WilliamIX Low Priority
Example Notebook Problems
#190 opened Sep 30, 2020 by WilliamIX Low Priority
@WilliamIX
4
Careful Curation and Documentation of default parameter file enhancement New feature or request
#182 opened Sep 17, 2020 by WilliamIX Low Priority
@WilliamIX
1
Feature suggestion: Pretty print an output which is displayed by jupyter/ipython display enhancement New feature or request
#112 opened Jun 26, 2020 by eldad-a Low Priority
2
CRN.species is a DataFrame
#108 opened Jun 24, 2020 by dr3y 1.2.0
@dr3y
1
CRN.fromstring() support enhancement New feature or request good first issue Good for newcomers
#101 opened Jun 19, 2020 by zoltuz Low Priority
2
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