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BioinfoMachineLearning

Popular repositories

  1. bio-diffusion bio-diffusion Public

    A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization

    Python 109 11

  2. DeepInteract DeepInteract Public

    A geometric deep learning pipeline for predicting protein interface contacts. (ICLR 2022)

    Python 58 11

  3. cryoppp cryoppp Public

    The programs of creating cryo-EM particle picking datasets

    Python 55 4

  4. DIPS-Plus DIPS-Plus Public

    The Enhanced Database of Interacting Protein Structures for Interface Prediction

    Python 41 8

  5. GCPNet GCPNet Public

    A PyTorch implementation of Geometry-Complete SE(3)-Equivariant Perceptron Networks (GCPNets)

    Python 38 3

  6. CryoVirusDB CryoVirusDB Public

    A dataset of labeled virus particles in cryo-EM micrographs (images) for training and testing machine learning methods of virus particle picking

    Python 25

Repositories

Showing 10 of 32 repositories
  • PoseBench Public

    Comprehensive benchmarking of protein-ligand structure generation methods

    Jupyter Notebook 21 MIT 0 0 0 Updated Jun 5, 2024
  • tulip Public

    Template-based modeling for accurate prediction of ligand-protein complex structures (TULIP)

    Python 0 1 0 0 Updated Jun 5, 2024
  • TransFew Public

    Transformer for protein function prediction (version 2)

    Jupyter Notebook 6 MIT 0 1 0 Updated Jun 2, 2024
  • JCVIDB Public

    A data repository for JCVI minimum cells

    JavaScript 0 GPL-3.0 0 0 0 Updated May 31, 2024
  • cryo2struct Public

    The programs for preprocessing cryo-EM density maps for machine learning

    Python 17 MIT 1 0 0 Updated May 8, 2024
  • GCPNet Public

    A PyTorch implementation of Geometry-Complete SE(3)-Equivariant Perceptron Networks (GCPNets)

    Python 38 MIT 3 0 0 Updated May 5, 2024
  • GCDM-SBDD Public

    A geometry-complete diffusion generative model (GCDM) for structure-based drug design

    Python 1 MIT 0 0 0 Updated Apr 19, 2024
  • bio-diffusion Public

    A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization

    Python 109 11 0 0 Updated Apr 19, 2024
  • SERSFormer Public

    Transformers for predicting food contamination

    Python 2 MIT 0 0 0 Updated Apr 16, 2024
  • GCPNet-EMA Public

    Protein Structure Accuracy Estimation using Geometry-Complete Perceptron Networks (Protein Science 2024)

    Python 6 MIT 2 0 0 Updated Mar 25, 2024

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