MultiOmicQC

Genomic annotation matching

Given two or more datasets on genomic intervals or with genomic build information:

Simple sanity checks

• Check seqlevels match (and report mismatches)
• Check seqnames match (and report mismatches)
• Check seqlengths (or max seqlengths)

Sample level checks

• Gender prediction
• Population prediction (genetic data)

Dataset-level checks

• Sample correlations
• General outlier discovery in matrix-like data