Releases: BigDataBiology/macrel
Releases · BigDataBiology/macrel
Version 1.2.0
Version 1.1.0
- Add support for bzip2 and xz compressed FASTA files
- Eliminate R dependency
- Include more extensive testing
- New feature computation code (Python implementation) made macrel about 3.5 times faster than before:
Version 1.0.1
Bugfix release. Fixes bug when "peptides" with 2 amino acids are present (it used to crash)
Version 1.0.0
Version 1.0 to coincide with paper publication DOI:10.7717/peerj.10555.
The big user-visible change is adding README.md
files to the output directories documenting the output files
Version 0.6.1
Makes atomicwrites into an optional dependency: atomicwrites causes issues, especially on Mac OSX
Version 0.6.0
A series of user-experience improvements:
- Add
--log-append
flag - Add
--log-file
argument - Add usage example in command line help message
- Use atomic writing for output to avoid partial results
Version 0.5.0
User visible changes
- Fix bug with Prodigal by changing internal parameters. Although this is a bugfix, it will also change the results in some cases.
- Output table now includes the version on the header
Bugfixes
- Fix bug with using
--force
and existing directories
Version 0.4.0
Biggest change is the use of a new feature computation where initial Methionines are removed for robustness.
Release 0.3.1
Fixes an issue with v0.3
which used non-Python 2 compatible syntax.
Version 0.3
- Added
get-examples
command - Added
get-smorfs
command - Updated training sets: results should be slightly better
- Converted to scikit-learn
- Fix license (must be GPL because of Peptides)
- Code is slightly faster at feature computation