BioImaging And Optics Platform (BIOP)
All the code that is publicly available/published by the BioImaging And Optics Platform (BIOP)
- 52 followers
- Lausanne, Switzerland
- https://biop.epfl.ch
Popular repositories
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qupath-extension-cellpose
qupath-extension-cellpose Publican extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
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ijp-imagetoatlas
ijp-imagetoatlas Public2D sections to 3D atlas registration with Fiji and QuPath
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ijl-utilities-wrappers
ijl-utilities-wrappers PublicWrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
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qupath-extension-warpy
qupath-extension-warpy PublicImgLib2 RealTransform brought to QuPath
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qupath-groovy-python-runner
qupath-groovy-python-runner PublicA proof of concept to run python segmentations and recovering the results within QuPath
Groovy 16
Repositories
Showing 10 of 96 repositories
- ijp-kheops Public
- lightsheet-brain-workflows Public
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- BIOP-desktop Public
- cellpose Public Forked from MouseLand/cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
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- qupath-extension-biop-hrm Public