Skip to content

Issues: BIMSBbioinfo/pigx_scrnaseq

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

28 Open 20 Closed
28 Open 20 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

m4/ax_r_package.m4 is outdated
#59 opened May 28, 2022 by rekado 1.1.9
new version of star will break the pipeline
#57 opened Mar 8, 2021 by frenkiboy 1.1.9
convert_matrix_from_mtx_to_loom:102 - ValueError: Length mismatch: Expected axis has 3 elements, new values have 2 elements
#56 opened Sep 12, 2020 by smoe
check for corresponding chromosome names in GTF and fasta feature
#53 opened Jul 19, 2020 by frenkiboy
Local pipeline install fails during convert_matrix_from_mtx_to_loom.py
#52 opened Jun 30, 2020 by t-carroll
3
loom2sce should be called only once enhancement New feature or request feature
#51 opened May 9, 2020 by frenkiboy
STAR breaks mm Matrix format for Velocyto output bug Something isn't working
#50 opened Apr 16, 2020 by frenkiboy
@frenkiboy
Pipeline dies on sort bam step if tmp files exist feature
#49 opened Mar 23, 2020 by frenkiboy
Add whitelist option to the pipeline
#47 opened Jan 29, 2020 by frenkiboy
FastqToSAM complains if header contains barcode
#43 opened Aug 3, 2018 by frenkiboy
Add number of cells per experiment to the report
#42 opened Aug 1, 2018 by frenkiboy
Rename slots in single cell experiment to standardly used names
#41 opened Jul 27, 2018 by frenkiboy
check whether the genome is defined
#38 opened Jun 4, 2018 by frenkiboy
Settings parsing - more descriptive error messages
#37 opened Jun 4, 2018 by frenkiboy
Verbosely describe how to contribute
#36 opened Jun 4, 2018 by frenkiboy
check whether the output directory is writeable
#33 opened May 29, 2018 by frenkiboy
make iSEE/singleCellTK package work nicely with sce object produced by the pipeline
#29 opened May 23, 2018 by frenkiboy
1
test pipeline with R3.5 and updated packages
#28 opened May 23, 2018 by frenkiboy
add barcode error correction enhancement New feature or request
#26 opened Apr 18, 2018 by frenkiboy
Redirect noisy output to log file
#24 opened Mar 22, 2018 by Blosberg
--printshellcmds not working
#23 opened Mar 22, 2018 by Blosberg
Log file output not going through on SM jobs on the cluster
#22 opened Mar 22, 2018 by Blosberg
add mitochondrial RNA contamination estimation enhancement New feature or request
#21 opened Mar 16, 2018 by frenkiboy
Develop indrops parser enhancement New feature or request
#20 opened Mar 15, 2018 by frenkiboy
Add report description
#16 opened Feb 20, 2018 by frenkiboy
ProTip! Type g p on any issue or pull request to go back to the pull request listing page.