Cell Locator is a free, open source and multi-platform pinning tool to facilitate mapping samples into common 3D spaces.
It is a desktop application based on 3D Slicer that displays the Allen Institute for Brain Science CCF or MNI atlas, color segmented by structure of the brain, and allows a user to create a planar polyline annotation to facilitate mapping samples into the corresponding atlas.
To get started, see https://cell-locator.readthedocs.io
To cite Cell Locator or learn about the funding sources, see https://cell-locator.readthedocs.io/en/latest/acknowledgments.html
This software is licensed under the terms of the BSD-3-Clause open-source license. See the LICENSE file for details.