Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

inclusion of 'D raw' calculation #35

Open
wants to merge 1 commit into
base: master
Choose a base branch
from

Conversation

JRodrigoF
Copy link

I'm interested in calculating linkage disequilibrium in its 'non-standardised' form, which in literature is often referred as simply D. I have done it using your LDBlockShow tool from VCFs and I think other people might want to have these estimates as well, besides D' and r2. I've made some additions to your repo so that it includes this option, probably needs further changes that you may add/correct on top, or that I am happy to do if you point me to. I refer to D as "D raw" here

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

1 participant