curated_adipo_descriptor

Code for the Adipocyte paper (Modelling the gene expression and the DNA-binding in the 3T3-L1 differentiating adipocytes)

Setting up the docker environment

The analysis was run on a docker image based on the the latest rocker/verse. Other R packages were added to the image and were made available as an image that can be obtained and launched on any local machine running docker.

$ docker pull bcmslab/adiporeg:latest
$ docker run -it bcmslab/adiporeg:latest bash

Obtaining the source code

The source code is hosted publicly on this repository in the form of a research compendium. This includes the scripts to reproduce the figures and tables in this manuscript. Another public repository curated_adipo_descriptor contains the scripts to download, prepare and analyze the data.

$ git clone https://github.com/BCMSLab/curated_adipo_descriptor

Runing the analysis

In the directory curated_adipo_descriptor, run make

$ cd curated_adipo_descriptor
$ make all

Details of the R environment

The version of R that was used to perform this analysis is the 3.5.2 (2018-12-20) on x86\_64-pc-linux-gnu.

More

This manuscript was published under the title Modelling the gene expression and the DNA-binding in the 3T3-L1 differentiating adipocytes