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A collection of QC pipelines and configuration files designed to run in the XNAT container service

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A collection of QA pipelines for assessing quality biomedical images

This repository collates a collection of "blessed" XNAT Container Service (CS) command JSONs that can be used to assess the quality of acquired images.

Where a customised Docker image is used it is included here next to the command JSON.

Pipelines included:

  • MRIQC - Automatic prediction of quality and visual reporting of MRI scans

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A collection of QC pipelines and configuration files designed to run in the XNAT container service

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