v1.9.2

• adding bit-summarize-column

v1.9.1

• added bit-get-test-data
  • currently only has metagenomics option, largely for testing the mg workflow
• removed bit-median-ratio-norm as that is encompassed in bit-normalize-table
• removed stub-bit-GTDB-tax-to-NCBI-tax as that type of path is no longer needed
  • the intent was for scenarios where we have MAGs we want to submit to NCBI, but have done GTDB taxonomic assignment, and need to have NCBI tax assignment for submission
  • but a better way would likely be to just do a different taxonomic assignment to NCBI, like with sourmash

Metagenomics workflow v1.0.0

• 1.0.0 release of metagenomics workflow

v1.9.0

• adding bit-get-workflow

SRA download workflow v1.0.0

• 1.0.0 release of the sra download workflow

Genome summarize workflow v1.0.4

• 1.0.4 release of the genome summarize workflow
  • this takes off from a switch i made from hosting it here (https://github.com/AstrobioMike/genome-assembly-summary)

v1.8.65

• update to bit-genbank-to-AA-seqs
  • fix where genbank records without a "note" value would fail
  • output file specification flag changed from -f to -o
  • added "product" to output fasta header

v1.8.64

• updating bit-get-genome-summary-wf to pull from releases page of https://github.com/AstrobioMike/genome-assembly-summary

v1.8.63

• updating bit-get-accessions-from-GTDB
  • updated links so they match new changes in GTDB
    • *metadata.tar.gz file suffixes were changed to *metadata.tsv.gz
  • improved formatting of output filenames when doing a species search (so spaces are replaces with dashes)

v1.8.62

• updating bit-combine-bracken-and-add-lineage to accept a user-specific taxonkit db directory rather than the default ~/.taxonkit location, thanks to contribution from @sterrettJD (#16)