NeuroCarto is a neural probe channel map editor for the Neuropixels probe family. It allows user to create a blueprint for arranging electrodes in a desired density and generate a custom channel map.
- Read/Visualize/Modify/Write Neuropixels channelmap files (
*.imro
). - Read SpikeGLX meta file (
*.meta
). - Read/Visualize/Modify/Write Blueprint (a blueprint for generating a channelmap by a programming way).
- Show Atlas mouse brain as a background image.
- Customize electrode selection and probe kind.
- Show channel efficiency and electrode density.
writing.
Please check Documentation for more details.
Require Python 3.10
.
pip install neurocarto
neurocarto
bg-atlasapi
Atlas Brain background image supporting.Pillow
,tifffile
other background image format supporting.probeinterface
probe/channelmap format import/exportpandas
,polars
channelmap data export.
Full optional dependencies are list in requirements-opt.txt.
Please check install page in wiki.