Releases: AllenInstitute/openscope_databook
OpenScope Databook
Riddles and Refinement
- Improved the "Tensor Decomposition of Spiking Activity Through Trials" notebook
- Altered dependency versions
- Skip long steps in a few notebooks during testing
- Turned automatic author/version insertion into a Sphinx Extension
Machine Learning and Human Learning
- Added Higher-order chapter
- Add Stim Templates Visualization notebook
- Added Suite2P Segmentation notebook
- Added CEBRA notebook
- Added TCA notebook
- Added Waveforms Visualization notebook
- Improved Optotagging notebook with new dandiset, analysis bugfixes
- Optimization to metadata notebook
- Added Google Analytics
- Bumped Jupyter book version
- Updated logo to new OpenScope logo
- Improved instructions in front page
- Improved methods section
- Changed way NWBs are printed
- Added citations for technologies referenced
- Fixed typos and formatting
Analysis, Environments, Infrastructure, Organization, Utilities, and sometimes Y
- Added dynamic insertion of authors list from contributors
- Added bibliography and citations to notebooks
- Made databook_utils package to contain some utilities for the repo and code reused in many notebooks
- Simplified Requirements to just direct dependencies
- Made Environment setup cell in notebooks work for all environments
- Added 2P Inclusion Criteria notebook
- Added FAQ
- Changed logo to Neuraldynamics
- Added Credit Assignment Reproducing Figures notebook
- Added methods chapter to notebook
- Added 2P Modality Alignment notebook
- Added folder of notebooks using embargoed dandisets
- Added spike matrix notebook
- Added version number to top of intro page
- Small changes to notebooks and markdown
Google Colab integration and more first-order analysis.
Added integration with Google Colab, and added two new notebooks; Current Source Density analysis and ROI Cell Matching between days.
NWB Reference Schemas, Running Plots, Unit Drift Plots
Added tables which can be used as a reference to explain all the fields in OpenScope's NWB files. Also added running plots to and renamed visualize_eye_tracking to visualize_behavior. Finally, added plots which explain Unit drift to visualize_unit_metrics.
Additional QC Plots and Dandiset Metadata Notebook
Creation of a new notebook that generates a table of metadata about the sessions in a dandiset. Also added three new plots, inspired by our QC plots, to two existing notebooks.
Front Page Improvement
Some documentation fixes and improvements to accomodate latest changes. Also added the newest content to the table of contents.
Neuronal Units and 2P Responses Visualizations
Three new notebooks; Neuronal Unit Metrics Evaluation/Visualization and Neuronal Units Responses to Stimulus Visualization for Ecephys, and 2P DFF Responses to Stimulus Visualization for Ophys.
2P Raw and Eye Tracking Visualization
Addition of 2-Photon raw movie visualization, eye tracking visualization, documentation additions, and a number of notebook improvements.