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Alepidoptera7/README.md

Hello Biological World!

I'm Andrew Lamothe, a bioinformatic engineer, but most people call me Quin.

I hold bachelor's degrees in Biomolecular Engineering and Bioinformatics, and Computational Mathematics from UCSC.

My primary interests pertain to the development of bioinformatic APIs and machine learning based methods of biological system and therapeutic molecule prediction.

Please, inspect my work such that we advance together!

Pinned

  1. 3D-Predictive-Cellular-Automata- 3D-Predictive-Cellular-Automata- Public

    Computational Mathematics Sr. Seminar project. Cellular automaton to predict tumor growth. Comparable to a 3-d Conway's Game of Life.

    Python 1

  2. k-means-to-BLAST- k-means-to-BLAST- Public

    Uses k-means prediction to ascertain genomic sequences within ambiguously attributed fasta format data. The resulting cluster sequences are used to develop NCBI BLAST requests.

    Python

  3. assembly_scaffold_BLAST assembly_scaffold_BLAST Public

    Algorithm to parse, assemble and align genomic sequences by use machine learning techniques. The resulting sequences are used to form NCBI-BLAST respects and return sequence homologs.

    Python

  4. MissingMotif MissingMotif Public

    Determines the most probable sequences missing from a greater set of genomic reads.

    Python

  5. global_alignment_prediction global_alignment_prediction Public

    Machine learning methods for global alignment prediction by use of fourmer frequiencies and path traversal techniques.

    Python

  6. ssDNA-Aptamer-Prediction- ssDNA-Aptamer-Prediction- Public

    BMEB Thesis project which develops ssDNA aptamer sequences from probabilistic data per provided protein epitope.

    Python 1