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@AbateLab

Abate Lab

A collection of bioinformatic tools developed by the Abate Lab at UC San Francisco.

Popular repositories

  1. Barcoding Barcoding Public

    Tools for evaluating quality of barcoding runs, filtering out low quality data, and counteracting PCR noise

    Python 5

  2. Pump-Control-Program Pump-Control-Program Public

    Program for controlling New Era syringe pumps at drop stations

    Python 4 4

  3. SiC-seq SiC-seq Public

    Scripts used in the 2017 SiC-seq paper

    Python 3 3

  4. ModularGelBeads ModularGelBeads Public

    Scripts corresponding to the manuscript "Modular barcode beads for microfluidic single cell genomics"

    Jupyter Notebook 2

  5. Mass_spec_image_UMAP Mass_spec_image_UMAP Public

    The scripts here are used to generate the UMAP clustering based on the data of mass spectrum imaging (MSI) by using R and MATLAB.

    MATLAB 2

  6. DAb-seq DAb-seq Public

    DAb-seq: combined single-cell DNA genotyping and protein quantification.

    Jupyter Notebook 1 2

Repositories

Showing 10 of 10 repositories
  • Python 0 0 0 0 Updated Jan 28, 2022
  • Mass_spec_image_UMAP Public

    The scripts here are used to generate the UMAP clustering based on the data of mass spectrum imaging (MSI) by using R and MATLAB.

    MATLAB 2 Apache-2.0 0 0 0 Updated Dec 28, 2021
  • DAb-seq Public

    DAb-seq: combined single-cell DNA genotyping and protein quantification.

    Jupyter Notebook 1 Apache-2.0 2 0 0 Updated Mar 16, 2021
  • ModularGelBeads Public

    Scripts corresponding to the manuscript "Modular barcode beads for microfluidic single cell genomics"

    Jupyter Notebook 2 MIT 0 0 0 Updated Aug 29, 2020
  • sorter-code Public

    Code for droplet sorting station.

    LabVIEW 0 3 0 0 Updated Jan 15, 2020
  • Pump-Control-Program Public

    Program for controlling New Era syringe pumps at drop stations

    Python 4 4 1 0 Updated May 17, 2018
  • SiC-seq Public

    Scripts used in the 2017 SiC-seq paper

    Python 3 3 3 0 Updated Nov 9, 2017
  • Abseq Public

    Scripts used in the 2016 Abseq paper

    Python 0 0 0 0 Updated Sep 12, 2016
  • SMDB-scripts Public

    Scripts used in SMDB-paper

    Python 0 0 0 0 Updated Feb 15, 2016
  • Barcoding Public

    Tools for evaluating quality of barcoding runs, filtering out low quality data, and counteracting PCR noise

    Python 5 0 0 0 Updated Aug 5, 2015

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