Meadow

ITK and ANTs library updates, and many improvements including boosts to test coverage, visualization fixes, and documentation.

Summary by @ncullen93:

improved testing
minor bug fixes
minor documentation improvements
upgrade to latest ANTs and ITK version
removed deprecated code (VTK-related visualization)
Things to accomplish during v0.5.x

rework docs and tutorials (to ants.dev)
reduce build size
refactor ants.plot function to be simpler
speed up import time (by deferring imports?)

What's Changed

• Affine updates by @seogier in #505
• STYLE: Remove unused CLI mangling code by @cookpa in #516
• COMP: Add support for Python 3.12 by @ravnoor in #510
• Update configure_ANTsPy.sh by @crossmanith in #523
• ENH: allow setting of fixed_parameters when creating a transform by @cookpa in #526
• DOC: Update aff_sampling docstring in interface.py by @dzenanz in #529
• make interpolation case-insensitive by @ncullen93 in #534
• Explicit imports by @ncullen93 in #533
• update reg docs by @ncullen93 in #535
• remove all R_PACKAGE_LIB refs by @ncullen93 in #537
• ENH: Histogram equalization by @ntustison in #539
• Code cov by @ncullen93 in #541
• ENH: allow workflow dispatch by @cookpa in #543
• ENH: Don't need extra parameter for branch by @cookpa in #545
• rightside ops by @ncullen93 in #547
• ENH: Support different segmentation labels in kelly_kapowski by @cookpa in #548
• Test viz png by @cookpa in #551
• ENH: More specific error messages if atropos fails by @cookpa in #556
• DOC: Update issue template by @cookpa in #558
• ENH: ARM64 builds by @cookpa in #557
• ENH: Coordinate with other n4 usage. by @ntustison in #560
• fix small doc typo by @ncullen93 in #563
• fix issue with plotting negative-sum images by @ncullen93 in #562
• change required slice_image args by @ncullen93 in #565
• COMP: Debugging output in runners by @cookpa in #564
• BUG: Check for zero image in plot by @cookpa in #566
• ENH: avoid kelly_kapowski returning GMP by @cookpa in #561
• Add more plotting tests by @ncullen93 in #568
• test plot grid and support 2d images by @ncullen93 in #569
• allow decrop_image to be chained by @ncullen93 in #571

New Contributors

• @crossmanith made their first contribution in #523
• @dzenanz made their first contribution in #529

Full Changelog: v0.4.2...v0.5.0