Ants read warp transform #165

	name: ci-pytest

	on:
	push:
	branches:
	- master
	pull_request:
	branches:
	- master
	workflow_dispatch:

	env:
	# Updates or changes to this, or the runner OS or arch will invalidate the cache
	python_version: "3.10" # Python version to use for testing - update when needed

	jobs:
	test:
	runs-on: ubuntu-20.04
	# Default shell needs to be bash for conda
	# https://github.com/conda-incubator/setup-miniconda?tab=readme-ov-file#important
	defaults:
	run:
	shell: bash -el {0}
	steps:
	- name: Setup Miniconda
	uses: conda-incubator/setup-miniconda@030178870c779d9e5e1b4e563269f3aa69b04081 # v3.0.3, devs recommend using hash
	with:
	miniconda-version: "latest"
	python-version: ${{ env.python_version }}
	auto-update-conda: true
	activate-environment: "test-env"

	- name: Configure Conda to use only .tar.bz2
	run: \|
	conda config --set use_only_tar_bz2 true

	- name: Checkout code
	uses: actions/checkout@v4 # Checkout PR code to 'antspy-pr'
	with:
	path: antspy-pr

	- name: Install dependencies and ANTsPy from PR
	run: \|
	conda create -n antspy-env python=${{ env.python_version }} -y
	conda activate antspy-env
	conda install -c conda-forge conda-pack coverage
	conda info
	pip install ./antspy-pr
	conda list
	antspy-pr/tests/run_tests.sh -c
	conda pack -n antspy-env -o ~/conda-env.tar.bz2

	- name: Run tests
	run: \|
	conda activate antspy-env
	bash antspy-pr/tests/run_tests.sh -c

	- name: Coveralls
	uses: coverallsapp/github-action@v2
	with:
	files: antspy-pr/tests/coverage.xml

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