Fix 1d HDF5 compilation (#3939) #2446
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| name: SUNDIALS | |
| on: [push, pull_request] | |
| concurrency: | |
| group: ${{ github.ref }}-${{ github.head_ref }}-sundials | |
| cancel-in-progress: true | |
| jobs: | |
| sundials-cpu: | |
| name: GCC SUNDIALS@6.5.0 | |
| runs-on: ubuntu-22.04 | |
| env: | |
| CCACHE_COMPRESS: 1 | |
| CCACHE_COMPRESSLEVEL: 10 | |
| CCACHE_MAXSIZE: 20M | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Dependencies | |
| run: | | |
| .github/workflows/dependencies/dependencies.sh | |
| .github/workflows/dependencies/dependencies_ccache.sh | |
| - name: Set Up Cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache/ccache | |
| key: ccache-${{ github.workflow }}-${{ github.job }}-git-${{ github.sha }} | |
| restore-keys: | | |
| ccache-${{ github.workflow }}-${{ github.job }}-git- | |
| - name: Build SUNDIALS | |
| run: | | |
| ccache -z | |
| wget -q https://github.com/LLNL/sundials/archive/refs/tags/v6.5.0.tar.gz | |
| tar xfz v6.5.0.tar.gz | |
| cd sundials-6.5.0 | |
| mkdir instdir builddir | |
| cd builddir | |
| cmake .. \ | |
| -DCMAKE_INSTALL_PREFIX=${PWD}/../instdir \ | |
| -DCMAKE_CXX_STANDARD=17 \ | |
| -DCMAKE_CXX_COMPILER_LAUNCHER=ccache \ | |
| -DCMAKE_C_COMPILER_LAUNCHER=ccache | |
| make -j4 | |
| make install | |
| cd ../.. | |
| - name: Compile Test | |
| run: | | |
| .github/workflows/dependencies/dependencies_clang-tidy-apt-llvm.sh 17 | |
| export CXXFLAGS="-fno-operator-names -Werror -Wall -Wextra -Wpedantic -Wnull-dereference -Wfloat-conversion -Wshadow -Woverloaded-virtual -Wnon-virtual-dtor -Wlogical-op -Wmisleading-indentation -Wduplicated-cond -Wduplicated-branches -Wmissing-include-dirs" | |
| export CCACHE_EXTRAFILES=${{ github.workspace }}/.clang-tidy | |
| export CCACHE_LOGFILE=${{ github.workspace }}/ccache.log.txt | |
| cmake -S . -B build \ | |
| -DCMAKE_VERBOSE_MAKEFILE=ON \ | |
| -DUSE_XSDK_DEFAULTS=ON \ | |
| -DAMReX_SUNDIALS=ON \ | |
| -DSUNDIALS_ROOT=${PWD}/sundials-6.5.0/instdir \ | |
| -DCMAKE_CXX_STANDARD=17 \ | |
| -DCMAKE_CXX_COMPILER_LAUNCHER=ccache | |
| cmake --build build -j 4 | |
| ${{github.workspace}}/Tools/C_scripts/mmclt.py --input ${{github.workspace}}/ccache.log.txt | |
| make -j4 -k -f clang-tidy-ccache-misses.mak \ | |
| CLANG_TIDY=clang-tidy-17 \ | |
| CLANG_TIDY_ARGS="--config-file=${{github.workspace}}/.clang-tidy --warnings-as-errors=*" | |
| ccache -s | |
| du -hs ~/.cache/ccache | |
| sundials-cuda: | |
| name: CUDA SUNDIALS@7.0.0 | |
| runs-on: ubuntu-22.04 | |
| env: | |
| CCACHE_COMPRESS: 1 | |
| CCACHE_COMPRESSLEVEL: 10 | |
| CCACHE_MAXSIZE: 75M | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Dependencies | |
| run: | | |
| .github/workflows/dependencies/dependencies_nvcc.sh | |
| .github/workflows/dependencies/dependencies_ccache.sh | |
| - name: Set Up Cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache/ccache | |
| key: ccache-${{ github.workflow }}-${{ github.job }}-git-${{ github.sha }} | |
| restore-keys: | | |
| ccache-${{ github.workflow }}-${{ github.job }}-git- | |
| - name: Build SUNDIALS | |
| run: | | |
| ccache -z | |
| # sundials requirement | |
| sudo apt-get install -y libcusolver-dev-12-0 libcusparse-dev-12-0 libcublas-dev-12-0 | |
| export PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:${PATH} | |
| export LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib64:/usr/local/cuda/lib64:${LD_LIBRARY_PATH} | |
| which nvcc || echo "nvcc not in PATH!" | |
| wget -q https://github.com/LLNL/sundials/archive/refs/tags/v7.0.0.tar.gz | |
| tar xfz v7.0.0.tar.gz | |
| cd sundials-7.0.0 | |
| mkdir instdir builddir | |
| cd builddir | |
| cmake .. \ | |
| -DENABLE_CUDA=ON \ | |
| -DCMAKE_INSTALL_PREFIX=${PWD}/../instdir \ | |
| -DCMAKE_CUDA_ARCHITECTURES=80 \ | |
| -DCMAKE_CXX_STANDARD=17 \ | |
| -DCMAKE_CXX_COMPILER_LAUNCHER=ccache \ | |
| -DCMAKE_C_COMPILER_LAUNCHER=ccache \ | |
| -DCMAKE_CUDA_COMPILER_LAUNCHER=ccache | |
| make -j4 | |
| make install | |
| cd ../.. | |
| - name: Compile Test | |
| run: | | |
| export CXXFLAGS="-fno-operator-names -Werror -Wall -Wextra -Wpedantic -Wnull-dereference -Wfloat-conversion -Wshadow -Woverloaded-virtual -Wnon-virtual-dtor -Wlogical-op -Wmisleading-indentation -Wduplicated-cond -Wduplicated-branches -Wmissing-include-dirs" | |
| export PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:${PATH} | |
| export LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib64:/usr/local/cuda/lib64:${LD_LIBRARY_PATH} | |
| which nvcc || echo "nvcc not in PATH!" | |
| cmake -S . -B build \ | |
| -DCMAKE_VERBOSE_MAKEFILE=ON \ | |
| -DUSE_XSDK_DEFAULTS=ON \ | |
| -DAMReX_GPU_BACKEND=CUDA \ | |
| -DAMReX_CUDA_ARCH=8.0 \ | |
| -DAMReX_SUNDIALS=ON \ | |
| -DSUNDIALS_ROOT=${PWD}/sundials-7.0.0/instdir \ | |
| -DCMAKE_CXX_COMPILER_LAUNCHER=ccache \ | |
| -DCMAKE_CUDA_COMPILER_LAUNCHER=ccache | |
| cmake --build build -j 4 | |
| ccache -s | |
| du -hs ~/.cache/ccache | |
| save_pr_number: | |
| if: github.event_name == 'pull_request' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Save PR number | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| run: | | |
| echo $PR_NUMBER > pr_number.txt | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: pr_number | |
| path: pr_number.txt | |
| retention-days: 1 |