Release 0.25.1 #2451
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Release 0.25.1 #2451
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Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4. - [Release notes](https://github.com/actions/cache/releases) - [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md) - [Commits](actions/cache@v3...v4) --- updated-dependencies: - dependency-name: actions/cache dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [matlab-actions/setup-matlab](https://github.com/matlab-actions/setup-matlab) from 1 to 2. - [Release notes](https://github.com/matlab-actions/setup-matlab/releases) - [Commits](matlab-actions/setup-matlab@v1...v2) --- updated-dependencies: - dependency-name: matlab-actions/setup-matlab dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Bumps [matlab-actions/run-command](https://github.com/matlab-actions/run-command) from 1 to 2. - [Release notes](https://github.com/matlab-actions/run-command/releases) - [Commits](matlab-actions/run-command@v1...v2) --- updated-dependencies: - dependency-name: matlab-actions/run-command dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Ignore sympy constants when sympifying expression strings to avoid clashes with sympy.*.
Missed one location before. Fixes AMICI-dev#2442.
The warning/error in AMICI-dev#2444 is caused by `petab.parameters.scale()`. Whether this warning should be suppressed there or not is to discussed in the PEtab context. For amici, I'd say we're fine with just accepting `np.log(0) == -inf` without a warning. Closes AMICI-dev#2444.
Allows providing only a subset of parameter to simulate_petab. The missing parameters are taken from nominalValues in the parameter table. Fixes AMICI-dev#2444. Nevertheless, exclude `Lang_PLOSComputBiol2024` to save time.
…v#2443) If MKLROOT is set (e.g., `source /opt/intel/oneapi/setvars.sh` will do that), first try FindBLAS instead of just relying on MKL_INCDIR and MKL_LIB. Fixes AMICI-dev#2441.
…MICI-dev#2445) * Require https://github.com/diegoferigo/cmake-build-extension/releases/tag/v0.6.0 * Specify cmake build types properly Closes AMICI-dev#2447 Closes AMICI-dev#2442
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🚮 Removed packages: pypi/cmake-build-extension@0.5.1, pypi/cmake-build-extension@0.5.1, pypi/jinja2@3.1.2, pypi/jinja2@3.1.2 |
Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## master #2451 +/- ##
==========================================
+ Coverage 77.70% 77.81% +0.10%
==========================================
Files 324 324
Lines 20928 20930 +2
Branches 1464 1464
==========================================
+ Hits 16262 16286 +24
+ Misses 4663 4641 -22
Partials 3 3
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FFroehlich
approved these changes
May 17, 2024
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