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This repo is for collecting notebooks and hopefully some fun interactive explorations of modeling ideas from BENG 260 / PHYS 279.

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neurodynamics

This repo is for collecting notebooks and hopefully some fun interactive explorations of modeling ideas from neurodynamics. This is a work in progress, so if you see any bugs or would like to contribute, thank you and you are welcome!

Hodgkin-Huxley models

NaKL.ipynb explores modeling of neurons using Na, K, and leak conductances.

gating_variables.ipynb is aimed at exploring synapses, but isn't complete just yet.

Data_Assimilation.ipynb has some initial lecture notes from professor Henry Abarbanel's class on neurodynamics at UCSD, implementation to follow.

Oscillator models

In a departure from modeling indiviual neurons, the following notebook explores abstracted dyanmical models from Ed Large's MusicDynamicsLab at UConn:

single_oscillator_model.ipynb

two_speakers_example.ipynb is more to play around with librosa, would could eventually provide input stimuli for the oscillator models.

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This repo is for collecting notebooks and hopefully some fun interactive explorations of modeling ideas from BENG 260 / PHYS 279.

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