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Update Singularity file definition to avoid keyserver errors #388

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@lgrozinger lgrozinger commented Mar 17, 2023

keys.gnupg.net has been deprecated now, so I changed it to the ubuntu keyserver keyserver.ubuntu.com.

Also since I was having problems with eduroam, since it blocks most ports (gpg uses 11371 by default), I added explicity the protocol and port number 80. This still works for other networks too.

And for some reason (maybe an upstream change) we needed to fetch another key to get apt to verify the required packages.


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keys.gnupg.net has been deprecated now, so I changed it to the ubuntu
keyserver keyserver.ubuntu.com.

Also since I was having problems with eduroam, since it blocks most
ports (gpg uses 11371 by default), I added explicity the protocol and
port number 80.
@lgrozinger lgrozinger changed the title Update Singularity file defintion to avoid keyserver errors Update Singularity file definition to avoid keyserver errors Mar 17, 2023
Characters like | cause problems in file paths on some systems. This
commit adds a few lines to replace "|", ";", and "#", which may cause
problems, with "_".

We found this solved errors with opening files with /bin/sh.
map in Python3 returns a map object, which does not have a
length. Some of the code in _pytadbit/tools used len on the map object
and has been updated so that it is compatible with Python3.x
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