Benchmarking several NVIDIA GPUs with dorado
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Updated
Feb 1, 2024 - Python
Benchmarking several NVIDIA GPUs with dorado
antibiotic resistance profiling of nanopore reads
Benchmark analysis of algorithms for determining full-length mRNA isoforms by Nanopore RNA-seq data.
Slides for presentation to the Queensland Mycobacterium Reference Laboratory 24/02/2022
Analysis documentation for part of the reference genome assembly of the humble guinea pig. Oxford Nanopore Technologies (ONT) pore-c data.
Nextflow pipeline to assemble genomes from nanopore reads.
Pipeline with GUI for nanopore-sequencing.
PathoPore - Longer Sequences and NextFlow Faster Analysis
😎 This repository contains scripts that I wrote for data analysis and visualization.
Course for ROPES summer school, May 2023
Target site duplication assessment from alignment file and genomic location of insertion sites.
snakemake pipeline based on nanopolish
Finalised PDF Files
Bioinformatic pipeline for SARS-CoV-2 sequence analysis
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