ecoli
Here are 18 public repositories matching this topic...
This is a pipeline that can be used to generate a phylogenetic tree, including a heatmap showing carriage of specific genes, the assigned phylogroup of each strain, and the names of each strain. It should now be capable of working with any sort of strains - currently I'm working on making small improvements.
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Oct 31, 2023 - Shell
An ensemble of plasmid classification tools
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Mar 28, 2023 - Shell
Presentations and work done for University of Pittsburgh course, Synthetic Biology.
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Jul 29, 2020
The Monorepo for all things Toronto Beaches
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Jun 9, 2023 - TypeScript
Collection of 1069 Escherichia coli virulence factors
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Nov 20, 2016
Using machine learning to predict E. coli phenotypes
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Jan 24, 2020 - TeX
Nanopore base caller based on original Chiron adding Dropout and SRU
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Nov 16, 2017 - Python
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Oct 19, 2021
Diffusion model of a system where sender strains produce AHL and has induced motility in the presence of arabinose. AHL diffuses and motility in receiver strains.
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May 7, 2021 - Python
Bash scripts to run virulencefinder and serotypefinder in local settings on ecoli fasta and fastq.gz files.
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Mar 11, 2024 - Shell
Maximum Entropy (MaxEnt) parameter inference in biological networks.
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May 17, 2024 - MATLAB
Annotation for full-genome assembly of Escherichia coli str. K12, substr. MG1655
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Mar 12, 2023 - R
Machine learning - breast cancer and ecoli - classification
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Sep 30, 2022 - Jupyter Notebook
Meta-Bio-Cargo predict #Ru-Bi-CO-S protein
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Mar 20, 2021 - Rust
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