3d engine implementation in DNA code!
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Updated
Nov 29, 2020
3d engine implementation in DNA code!
General purpose tools for high-throughput catalysis
Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations
SBML differential equation and chemical reaction model (Gillespie simulations) for Julia's SciML ModelingToolkit
The Meta-Species Oriented Biosystem Syntax in Python (MobsPy) was invented to facilitate the design of complex Chemical Reaction Networks
BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
Finite State Projection algorithms for chemical reaction networks
DelaySSAToolkit.jl: a tool in Julia for stochastic simulation with delays
This repo contains the code for the paper "Data-driven discovery of multiscale chemical reactions governed by the law of mass action"
Network analysis from a list of molecules
genCRN: Fast enumeration of non-isomorphic chemical reaction networks
An application for simulating Chemical Reaction Networks
Matlab implementation of automated model reduction of biochemical reaction networks
Simulates Chemical Reaction System of Partial-Log-Linear Model
Reaction Pathway Database
Some tools for performing Monte Carlo simulations of chemical reaction networks in my research
Dedicated command-line compiler for Systems Biology
a SageMath package to work with sign vector conditions for chemical reaction networks
Detect reactions from atomic simulation trajectory
The source for the ReactSearch project's website.
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