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new docker distroless image #489

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iQuxLE wants to merge 1 commit into exomiser:master from iQuxLE:docker-image

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iQuxLE commented Mar 30, 2023

The old docker-distroless image had some compatibility issues.

During an analysis it would report an error during creation of a default output directory.

2023-03-29 11:07:49.196 ERROR 1 --- [           main] o.m.exomiser.cli.config.MainConfig       : Unable to create default output directory for results /app/classes/results

java.nio.file.AccessDeniedException: /app/classes/results

Also, sometimes I had parsing errors like:

Caused by: htsjdk.tribble.TribbleException$MalformedFeatureFile: Unable to parse header with error: /home/nonroot/exomiser/Pfeiffer.vcf.gz, for input source: file:///home/nonroot/exomiser/Pfeiffer.vcf.gz

The new distoless image does not create those errors.


          new distroless image, better compatibility

5aa894c

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