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USDA-VS

USDA-Veterinary Services

15 followers
tod.p.stuber@usda.gov

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vSNP vSNP Public

vSNP -- validate SNPs

Python 19 12
GenoFLU GenoFLU Public

Influenza data pipeline to automate genotyping assignment

Python 13 1
vSNP3 vSNP3 Public

vSNP -- validate SNPs

Python 2 1
NAHLN_AMR NAHLN_AMR Public

Python 2 1
fastq_data_set-tb_complex fastq_data_set-tb_complex Public
vcf_test_files vcf_test_files Public

A small set of VCFs with expected output tables for script testing

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Showing 10 of 13 repositories

Flumina Public Forked from flu-crew/Flumina
A pipeline for the analysis of Illumina sequence data from Influenza viruses

R 0 GPL-3.0 1 0 0 Updated May 13, 2024
vSNP3 Public
vSNP -- validate SNPs

Python 2 GPL-3.0 1 3 1 Updated May 9, 2024
GenoFLU Public
Influenza data pipeline to automate genotyping assignment

Python 13 GPL-3.0 1 0 0 Updated May 8, 2024
nvsl_bioinformatic_training Public
The NVSL Bioinformatics Workshop will feature training on command-line bioinformatic tools, processes, and resources routinely used at NVSL for diagnostic testing.

HTML 0 0 0 0 Updated Apr 24, 2024
vsnp3_test_dataset Public
Dataset for testing vSNP version 3 installation

0 0 0 0 Updated Jan 2, 2024
vSNP Public
vSNP -- validate SNPs

Python 19 GPL-3.0 12 3 0 Updated Nov 21, 2022
NAHLN_AMR Public

Python 2 1 0 0 Updated Sep 7, 2022
vSNP_reference_options Public
vSNP supporting files

0 GPL-3.0 1 0 0 Updated Sep 21, 2021
minimum_fastqs Public
testing files: smallest file size and still complete through vSNP_step1.py

0 0 0 0 Updated Jan 7, 2020
vSNP_archive Public
Archived versions of vSNP

Python 0 Apache-2.0 0 0 0 Updated Jan 7, 2020

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